Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021138
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 31 1.4
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 31 1.4
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 31 1.4
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 29 4.3
03_06_0579 + 34870958-34874578 29 4.3
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 5.6
09_02_0082 - 4060018-4061604 29 5.6
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 29 5.6
07_01_0753 - 5799733-5799741,5799938-5800642 29 5.6
03_06_0693 - 35592547-35592651,35592771-35592869,35593024-355930... 28 7.4
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 28 9.8
03_02_0943 + 12598616-12598789,12599790-12601250 28 9.8
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 160 HQHPSKLGTSPRKLQEMAMPSTEGHDVTNI 249
HQHP G S K Q + PS GH+ +
Sbjct: 197 HQHPRGFGRSLEKEQRVVQPSAGGHEALGV 226
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 515 MEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLAVTVNN 658
++ S NN KKAA+ D+ ++K+ V+D + G Y+ T N
Sbjct: 754 LDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHTTEN 801
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -3
Query: 662 PHCSLSPLSNHLQTPIPHTYRRRRPASLLSRHVDRRP 552
PH SL+ S H + P RRR P LL R RRP
Sbjct: 57 PHSSLAAASRHYASSTPGR-RRRAPPMLLRRRRARRP 92
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 390 NVRLQVEVEELRRQITDKQELLAAAAEAIDVLEQQGS 500
+ R+Q+++ +L +Q+ D++E+ E + L QGS
Sbjct: 217 SARMQLQIADLHKQLEDQKEVARKNEEETEKLRHQGS 253
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 506 DDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLAVTVNNEDL 667
D +E+ N+ + K AD H++ T D+ A + A + L V N +DL
Sbjct: 307 DTDLELR-NDDSGAKDGADNHEDATNFVDSSTGYVATGDGASELLEVPANVDDL 359
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 560 DPH--DETTEKRDAVDDTCAESESAGDYLAVTVNNED 664
DPH D + ++ D C ++ES+ L+ +NNE+
Sbjct: 1391 DPHLPDVGSSTSTSISDNCIQTESSNTSLSANLNNEE 1427
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 662 PHCSLSPLSNHLQTPIPHTYRRRRPASLL 576
PH + +PL+ L+TP PH R+P SL+
Sbjct: 308 PHAATAPLA--LRTPAPHLRVSRKPRSLV 334
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 593 AVDDTCAESESAGDYLA--VTVNNEDLDELMKL--RRENRKALQMIK 721
A +DT A +ES GD+LA V ED D + +L R R L M K
Sbjct: 20 AAEDTLAAAESVGDHLAEMVAAAGEDPDAIAELPPLRRARAFLAMAK 66
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 477 RWPQLRPRAAPACQLFAVVTLPLLLVI 397
R +LRPR P + F+ TLPLLL +
Sbjct: 68 RLRRLRPRRVPCLRAFSARTLPLLLFL 94
>03_06_0693 -
35592547-35592651,35592771-35592869,35593024-35593094,
35594457-35595042
Length = 286
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 710 VKLYGFRVSIS*VHPNPHCSLSPLSNHLQTPIPHTYRRRRPASLLSRHVDRRPFSSKRYC 531
V L R++++ + P+P L+P + P+ + RR A L+ DR ++ Y
Sbjct: 5 VLLLSPRLAVAPLRPHPRLGLTPTAVGRPLPLAYLGRRAAAARQLAAVADRNVYNGV-YG 63
Query: 530 SWT 522
WT
Sbjct: 64 PWT 66
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 348 GNGSPPAVQGLLEHNVRLQVEVEELR 425
G G PPA GLL N+ L E++R
Sbjct: 53 GYGRPPAPTGLLVRNISLTARPEDIR 78
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 503 LDDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGD-YLAVTVNNEDLDELM 679
L+ S E +N+A D D+TT+K + D A E D ++ + ++ +L
Sbjct: 201 LERSREKLSSNTALASSLEDELDQTTQKLQTLKDLQARREDPSDIFIEIKKMASEVQQLR 260
Query: 680 KLRRENRKALQMIKGCMKKNTAA 748
+ ++ M+ +++ A+
Sbjct: 261 GMANASKSEAMMLAAEIEQTKAS 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,839,537
Number of Sequences: 37544
Number of extensions: 405066
Number of successful extensions: 1216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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