Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021138
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 36 0.025
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 36 0.025
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 36 0.025
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.24
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 33 0.24
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.24
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 33 0.24
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.7
U55373-9|AAV58870.1| 648|Caenorhabditis elegans Hypothetical pr... 30 2.2
U55373-8|AAD34666.1| 805|Caenorhabditis elegans Hypothetical pr... 30 2.2
U55373-7|AAC25890.2| 890|Caenorhabditis elegans Hypothetical pr... 30 2.2
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 30 2.2
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 29 2.9
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 29 3.8
U21324-5|AAN63436.1| 486|Caenorhabditis elegans Hypothetical pr... 29 5.1
U21324-4|AAN63435.1| 537|Caenorhabditis elegans Hypothetical pr... 29 5.1
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 28 6.7
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 36.3 bits (80), Expect = 0.025
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 258 SMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQIT 437
+ ++ E + GLR+EN L I L ++LG G +V + + RL++E EEL+ +
Sbjct: 1496 AQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKIIRRLEIEKEELQHALD 1554
Query: 438 DKQELLAAAAEAIDVLEQQGSVS 506
+ + A AE VL Q VS
Sbjct: 1555 EAE--AALEAEESKVLRAQVEVS 1575
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 36.3 bits (80), Expect = 0.025
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 258 SMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQIT 437
+ ++ E + GLR+EN L I L ++LG G +V + + RL++E EEL+ +
Sbjct: 1496 AQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKIIRRLEIEKEELQHALD 1554
Query: 438 DKQELLAAAAEAIDVLEQQGSVS 506
+ + A AE VL Q VS
Sbjct: 1555 EAE--AALEAEESKVLRAQVEVS 1575
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 36.3 bits (80), Expect = 0.025
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 258 SMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQIT 437
+ ++ E + GLR+EN L I L ++LG G +V + + RL++E EEL+ +
Sbjct: 1499 AQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKIIRRLEIEKEELQHALD 1557
Query: 438 DKQELLAAAAEAIDVLEQQGSVS 506
+ + A AE VL Q VS
Sbjct: 1558 EAE--AALEAEESKVLRAQVEVS 1578
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 33.1 bits (72), Expect = 0.24
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVR-LQVEVEELRRQITDKQEL 452
E L+ R+EN L + L ++LG G + L+ VR L+VE EEL++ + + +
Sbjct: 1506 EYLDSTRRENKSLAQEVKDLTDQLGEGGRSVAE--LQKIVRKLEVEKEELQKALDEAE-- 1561
Query: 453 LAAAAEAIDVLEQQGSVS 506
A AE VL Q VS
Sbjct: 1562 AALEAEEAKVLRAQIEVS 1579
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELL 455
+Q+ GLR+EN L L E L G A L ++ RL++E EEL+R + + + L
Sbjct: 1509 DQVEGLRRENKSLSDETRDLTESLSEGG-RATHALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELL 455
+Q+ GLR+EN L L E L G A L ++ RL++E EEL+R + + + L
Sbjct: 1509 DQVEGLRRENKSLSDETRDLTESLSEGG-RATHALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 33.1 bits (72), Expect = 0.24
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVR-LQVEVEELRRQITDKQEL 452
E L+ R+EN L + L ++LG G + L+ VR L+VE EEL++ + + +
Sbjct: 1506 EYLDSTRRENKSLAQEVKDLTDQLGEGGRSVAE--LQKIVRKLEVEKEELQKALDEAE-- 1561
Query: 453 LAAAAEAIDVLEQQGSVS 506
A AE VL Q VS
Sbjct: 1562 AALEAEEAKVLRAQIEVS 1579
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELL 455
+Q+ GLR+EN L L E L G A L ++ RL++E EEL+R + + + L
Sbjct: 1509 DQVEGLRRENKSLSDETRDLTESLSEGG-RATHALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 276 EQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELL 455
+Q+ GLR+EN L L E L G A L ++ RL++E EEL+R + + + L
Sbjct: 9 DQVEGLRRENKSLSDETRDLTESLSEGG-RATHALSKNLRRLEMEKEELQRGLDEAEAAL 67
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 LDDSMEVSMNNSASMKKAADPHDETTEK-RDAVDDTCAESESAGDYL 640
++D M+ + S KKAAD H++ EK R +D A + A D L
Sbjct: 315 MEDMMQRAKAKLESAKKAADQHEKDVEKARKMIDQARARLQEAVDTL 361
>U55373-9|AAV58870.1| 648|Caenorhabditis elegans Hypothetical
protein F26F12.3c protein.
Length = 648
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 309 HLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLE 488
HLK+ + G S ++GLL+H LQ V L + + + +E AA E IDV
Sbjct: 162 HLKVLLNSDIAPSGPFSYQILRGLLKHAANLQEVVAILSKLVAEWKEGGVAAPECIDVHR 221
Query: 489 QQGS 500
Q S
Sbjct: 222 SQKS 225
>U55373-8|AAD34666.1| 805|Caenorhabditis elegans Hypothetical
protein F26F12.3b protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 309 HLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLE 488
HLK+ + G S ++GLL+H LQ V L + + + +E AA E IDV
Sbjct: 319 HLKVLLNSDIAPSGPFSYQILRGLLKHAANLQEVVAILSKLVAEWKEGGVAAPECIDVHR 378
Query: 489 QQGS 500
Q S
Sbjct: 379 SQKS 382
>U55373-7|AAC25890.2| 890|Caenorhabditis elegans Hypothetical
protein F26F12.3a protein.
Length = 890
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 309 HLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLE 488
HLK+ + G S ++GLL+H LQ V L + + + +E AA E IDV
Sbjct: 404 HLKVLLNSDIAPSGPFSYQILRGLLKHAANLQEVVAILSKLVAEWKEGGVAAPECIDVHR 463
Query: 489 QQGS 500
Q S
Sbjct: 464 SQKS 467
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 390 NVRLQVEVEELRRQITDKQELLAAAAEAIDVL 485
N L + V +L I DK++LL EAID L
Sbjct: 519 NAGLDISVNQLNEIIVDKRQLLPVRKEAIDAL 550
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 445 CLSVICRRNSSTSTCNRTLCSKRPCTAGGDPLPSF 341
C S++C N +T +R C KRPC LP+F
Sbjct: 571 CSSMLCA-NGTTCREDRVKCDKRPCPIRALCLPNF 604
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
protein F18C12.1 protein.
Length = 4171
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 500 SLDDSMEVSMNNSASMKKAADPHDETTEK-----RDAVDDTCAESESAGDYLAVTVNNED 664
S+ ++ +NN ++ A DE EK ++ DD C E+ D T+N E
Sbjct: 458 SIRSLSKMMLNNISNYSAFASKLDEFIEKLQYAEKECFDDWCRETVGLIDNKNETINLET 517
Query: 665 LDELMKLRRENRK 703
++M L NR+
Sbjct: 518 TGKIMYLEASNRE 530
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 258 SMKQYEEQLNGLRKENFHLKLRIYFLEEKL 347
S+ + ++++ L +EN H K +++ L+EKL
Sbjct: 766 SLNESDDRVRELTRENMHTKEQVFMLQEKL 795
>U21324-5|AAN63436.1| 486|Caenorhabditis elegans Hypothetical
protein C35D10.7b protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 509 DSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLAVTV 652
DS S N +S + KR +V++ C E E GD+L + V
Sbjct: 43 DSRPTSDNEVSSSSDRNNDEPSVRRKRKSVENMCHEREHHGDHLQMQV 90
>U21324-4|AAN63435.1| 537|Caenorhabditis elegans Hypothetical
protein C35D10.7a protein.
Length = 537
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 509 DSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLAVTV 652
DS S N +S + KR +V++ C E E GD+L + V
Sbjct: 94 DSRPTSDNEVSSSSDRNNDEPSVRRKRKSVENMCHEREHHGDHLQMQV 141
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily assigned
gene nameprotein 158 protein.
Length = 1003
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 569 DETTEKRDAVDDTCAESESAGDYLAVTVNNEDLDELMKLRRENRKALQMIKGCMKKNTA 745
+ +D+ + T ESE + + + +NE ++ K ++E KAL K K +TA
Sbjct: 881 ERRANSKDSDEGTPTESEETTEKKSTSTDNEQANQETKTKKERMKALDRSK-VSKMHTA 938
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 186 KSSEVARNGDAVN*RSRCYKYQWISMK---QYEEQLNGLRKENFHLKLRIYFLEEK 344
K E D V+ R K Q +K QY+ +L L KEN LK R+ ++K
Sbjct: 196 KKDEPEEKKDNVSAEERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLSDDK 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,832
Number of Sequences: 27780
Number of extensions: 356200
Number of successful extensions: 1161
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -