Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021138
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 31 0.67
At1g03300.1 68414.m00308 agenet domain-containing protein contai... 31 1.2
At2g12520.1 68415.m01354 hypothetical protein low similarity to ... 30 1.5
At3g05830.1 68416.m00654 expressed protein 30 2.0
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila... 29 2.7
At3g60850.1 68416.m06807 expressed protein 29 4.7
At1g47900.1 68414.m05334 expressed protein 29 4.7
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 6.2
At4g25160.1 68417.m03622 protein kinase family protein contains ... 28 6.2
At1g06850.1 68414.m00730 bZIP transcription factor, putative con... 28 6.2
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 28 8.2
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 8.2
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 8.2
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 396 RLQVEVEELRRQITDKQELLAAAAEAIDVLEQ 491
+L+ EVEE+R QI +K+ L + A+ + LE+
Sbjct: 742 KLEEEVEEMRSQIKEKEGLYKSCADTVSTLEK 773
>At1g03300.1 68414.m00308 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 670
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 518 EVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLAVTV-NNEDLDE 673
E + + ++ +K + H+ + D +D TC SES ++ NN+D+D+
Sbjct: 396 EENSKDGSTKRKREEKHNSASSVMDEIDGTCNGSESEISNTGKSICNNDDVDD 448
>At2g12520.1 68415.m01354 hypothetical protein low similarity to
protective antigen [Streptococcus pyogenes] GI:8996050,
paramyosin [Anisakis simplex] GI:8117843
Length = 356
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 384 EHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLEQQ 494
EH V Q E+E L+ +++ ++L AE I ++E +
Sbjct: 135 EHEVSFQAEIERLKMELSTSKDLEKGYAEKIGLMEME 171
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +3
Query: 186 KSSEVARNGDAVN*RSRCYKYQWISMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPP 365
K E+ + D + S +K++ K+ E QL R+ + LK ++ LE L
Sbjct: 219 KDEEITKLKDEIRLMSGQWKHK---TKELESQLEKQRRTDQDLKKKVLKLEFCLQEARSQ 275
Query: 366 AVQGLLEHNVRLQVEVEELRRQITDKQEL 452
+ L R +E++E+R I++KQ L
Sbjct: 276 T-RKLQRKGERRDMEIKEIRDLISEKQNL 303
>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1171
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 590 DAVDDTCAESESAGDYLAVTVNNEDLDELMKLRRENRKALQM 715
+A+D + SA DY +TV E+L E + R E R+ +++
Sbjct: 688 EAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMEL 729
>At3g60850.1 68416.m06807 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 506 DDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESE--SAGDYLAVTVNNEDLDELM 679
+DS E S+++ ++ P D T +K D + +TC + D+ ++ N + +L
Sbjct: 533 EDSFERSLDDVVPWEQITPPSDCTNQKEDLLSETCKPEKWLKCNDFDENSILNSEDSKLT 592
Query: 680 K 682
K
Sbjct: 593 K 593
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 369 VQGLLEHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLEQQGSVSTTVWRC 524
++ L ++ V++E L+ Q+ + ++LLA D ++ ++ T RC
Sbjct: 796 IEELRSEKEKMAVDIEGLKCQLQESEQLLADIRSQFDSAQRSNRLADTQLRC 847
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 381 LEHNVRLQVEVEELRRQITDKQELLAAAAEAIDVLEQ 491
LE ++ +E EE RQI ++QE A +VLEQ
Sbjct: 762 LEQRLKATLEQEEKERQIKERQEREENERRAKEVLEQ 798
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 QGLLEHNVRLQVEVEELRRQITDKQELLAAA-AEAIDVLEQQGSVS 506
Q ++ V L EVE+LR ++ QE+ A A E D + G ++
Sbjct: 340 QSYTDNQVNLNFEVEKLRAELRHVQEMYAVAQTETFDASRKLGELN 385
>At1g06850.1 68414.m00730 bZIP transcription factor, putative
contains Pfam profile: PF00170 bZIP transcription factor
Length = 337
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 270 YEEQLNGLRKENFHLKLRIYFLEE--KLGNGSPPAVQGLLEHNVRLQVEVEEL 422
Y+ NGL EN LKLR+ +E+ +L N A++ +E R+++E E+
Sbjct: 197 YQRDTNGLANENTELKLRLQAMEQQAQLRNALNEALRKEVE---RMKMETGEI 246
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 504 RLNPAALERRWPQLRPRAAPACQLFAVVTLPLLL 403
R P+A+ R L+PR A A +L + LPLLL
Sbjct: 806 RFLPSAIHPRIKGLKPRTAVANRLATLCILPLLL 839
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 653 SLSPLSNHLQTPIPHTYRRRRPASLLSRHVDRRPFSSKRYCSWTPPYCRR 504
S SP + ++P P +RR P+ RH R P ++R S +PP RR
Sbjct: 332 SPSPPARRHRSPTPPARQRRSPSPPARRH--RSPPPARRRRSPSPPARRR 379
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/32 (25%), Positives = 24/32 (75%)
Frame = +3
Query: 399 LQVEVEELRRQITDKQELLAAAAEAIDVLEQQ 494
LQ E+E++R ++T K+E++ +++++ +++
Sbjct: 484 LQQEIEKIRAEMTKKEEMIEEECKSLEIKKEE 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,511
Number of Sequences: 28952
Number of extensions: 320676
Number of successful extensions: 980
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -