Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021137
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    29   0.55 
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      29   0.55 
U97407-8|AAN84851.1|  397|Caenorhabditis elegans Prion-like-(q/n...    26   5.1  
U97407-7|AAB52480.2|  457|Caenorhabditis elegans Prion-like-(q/n...    26   5.1  

>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 124 AELREASVAAVGSLQRRVHERPLL 53
           +E+REAS AA+G++ R + E+P L
Sbjct: 477 SEVREASYAAMGAMMRAIGEKPSL 500


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 124 AELREASVAAVGSLQRRVHERPLL 53
           +E+REAS AA+G++ R + E+P L
Sbjct: 477 SEVREASYAAMGAMMRAIGEKPSL 500


>U97407-8|AAN84851.1|  397|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform b protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 50  Y*QRALVDAALERADRRHARLTQLSADLVDALNLY 154
           Y Q  L+DA L   DR+   L Q+   + D L LY
Sbjct: 325 YAQGNLIDAHLASIDRQSNSLAQIDVAIRDVLALY 359


>U97407-7|AAB52480.2|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform a protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 50  Y*QRALVDAALERADRRHARLTQLSADLVDALNLY 154
           Y Q  L+DA L   DR+   L Q+   + D L LY
Sbjct: 333 YAQGNLIDAHLASIDRQSNSLAQIDVAIRDVLALY 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,515
Number of Sequences: 27780
Number of extensions: 13195
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)