Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021136
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_51919| Best HMM Match : Filament_head (HMM E-Value=4.5)             29   4.4  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 42/61 (68%), Positives = 47/61 (77%)
 Frame = +2

Query: 620 EYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKDGPQEGDRRPKANIMKLGDGLF 799
           EY++LEHESVPGVVE LKIIT  KS+RIAKFAFDYA K   ++     KANIMK  DGLF
Sbjct: 126 EYTSLEHESVPGVVEMLKIITRRKSQRIAKFAFDYATKHNRKKVTCVHKANIMKKADGLF 185

Query: 800 L 802
           L
Sbjct: 186 L 186



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +2

Query: 251 GSRIKCTLIPGDGVGPELVYAVQEVFK 331
           G R   TLIPGDGVGPELV  V+++FK
Sbjct: 63  GGRHTVTLIPGDGVGPELVNCVKQMFK 89



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 549 KSLPNVKCRHQDVDCIIIREQTEESTQLWNMNPFPAWWSV*RSSPQRNPSVLRNSLSTTP 728
           +SLP +K RH ++D +IIREQTE           P    + +   +R    +        
Sbjct: 102 RSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRRKSQRIAKFAFDYA 161

Query: 729 *KMGRKKVTAV 761
            K  RKKVT V
Sbjct: 162 TKHNRKKVTCV 172


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 593 HHHQRTDRREYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKD 736
           HHH +TD +E   ++ ES+   +E  + +    S+   ++A +Y V D
Sbjct: 135 HHHIKTDSQERCQIDVESIKTGLEIAEQVNPMDSDSEEEYATEYEVTD 182


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 545 SEVIAQREVQAPGRGLHHHQRTDRREYSALEHESVPGVVECLKIITAAKSERIAKFAFDY 724
           SE  A    +  GR  + H+R   +E  +L+      V+ C +  T  K E+IAK +   
Sbjct: 255 SENSADGRKKTSGRRSNGHKRHSSKESRSLDTSRDSAVI-CSESSTPTKDEKIAKSSVSS 313

Query: 725 AVKDGPQEGDRRPKA 769
                P E +   K+
Sbjct: 314 ECSSSPHEAEESRKS 328


>SB_51919| Best HMM Match : Filament_head (HMM E-Value=4.5)
          Length = 145

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 RKMYVMHHLEPCNRGQQRKSYQMHLDSWGRCRS*ACLRCTRS 324
           + ++  HHL  C  G    S    L SW  C S A LR + S
Sbjct: 8   KNLFFRHHLAACRFGSTSTSSS--LSSWSSCTSSASLRTSAS 47


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 418 VYDVFEWCTKCWIHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPRNQGAFD 260
           +Y  F     CW+HF+K+K  + H N     +F  + D L    +  N+G  D
Sbjct: 46  MYVRFGGTASCWMHFKKDKALE-HKN---FTDFTITPDDLERIAMIGNKGGVD 94


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 323 VFKAASIPVDFESFFFSEVNPTLSAPLEDV 412
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,840,543
Number of Sequences: 59808
Number of extensions: 569989
Number of successful extensions: 1397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)