Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021136
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 388 CWIHFRKEKGFKVHWNAGRLENFL 317
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 388 CWIHFRKEKGFKVHWNAGRLENFL 317
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 509 SVMPWIFTLTWYS 547
           SV+P I  LTWYS
Sbjct: 803 SVIPRILYLTWYS 815


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 572 QAPGRGLHHHQRT 610
           Q P + LHHHQ T
Sbjct: 808 QPPHQQLHHHQST 820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,268
Number of Sequences: 438
Number of extensions: 5158
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)