Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021135
(716 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 136 5e-31
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 111 2e-23
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 107 4e-22
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 92 1e-17
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 91 3e-17
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 88 2e-16
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 86 7e-16
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 84 4e-15
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 81 2e-14
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 81 4e-14
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 81 4e-14
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 78 2e-13
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 77 3e-13
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 76 8e-13
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 76 1e-12
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 74 3e-12
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 69 2e-10
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 68 2e-10
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 64 3e-09
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 63 8e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 63 8e-09
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 62 1e-08
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 62 2e-08
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 58 3e-07
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 57 5e-07
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 56 9e-07
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 54 4e-06
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 50 4e-05
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 48 2e-04
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 47 4e-04
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 47 4e-04
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 44 0.005
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 40 0.046
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 40 0.061
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 37 0.57
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 36 1.3
UniRef50_UPI0000E47A9F Cluster: PREDICTED: hypothetical protein;... 35 1.7
UniRef50_UPI000058888F Cluster: PREDICTED: similar to ENSANGP000... 35 1.7
UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole gen... 34 4.0
UniRef50_Q9VJJ9 Cluster: CG31738-PB, isoform B; n=3; Drosophila ... 34 4.0
UniRef50_UPI0000E1F6E9 Cluster: PREDICTED: hypothetical protein;... 33 7.0
UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,... 33 9.3
UniRef50_Q0S4B0 Cluster: Putative uncharacterized protein; n=2; ... 33 9.3
UniRef50_A1GG39 Cluster: Putative uncharacterized protein; n=2; ... 33 9.3
UniRef50_A0GGU8 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
UniRef50_Q7F729 Cluster: OSJNBa0004B13.22 protein; n=2; Oryza sa... 33 9.3
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 136 bits (329), Expect = 5e-31
Identities = 64/78 (82%), Positives = 70/78 (89%)
Frame = +3
Query: 483 SRASLGCSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 662
S L S K+QEINK KQAVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNRRR+ RKGP
Sbjct: 13 SEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGP 72
Query: 663 LIIFNKDQGLTRAFRNIP 716
LII+NKDQGLTR+FRNIP
Sbjct: 73 LIIYNKDQGLTRSFRNIP 90
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 111 bits (267), Expect = 2e-23
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 483 SRASLGCSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 662
S L S +VQ++ K KQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GP
Sbjct: 151 SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGP 210
Query: 663 LIIFNKDQGLTRAFRNIP 716
L++++KD+GL +AFRNIP
Sbjct: 211 LVVYDKDEGLRKAFRNIP 228
Score = 100 bits (239), Expect = 4e-20
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +3
Query: 36 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 215
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 216 AGHQTSAESWGTG 254
AGHQTSAESWGTG
Sbjct: 61 AGHQTSAESWGTG 73
Score = 92.3 bits (219), Expect = 1e-17
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWH 115
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVVA 507
L ++AA+GVPALVQ++GH+I+ + E PLVV+
Sbjct: 127 LVSAIAASGVPALVQSKGHVIDGVSEFPLVVS 158
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 107 bits (256), Expect = 4e-22
Identities = 47/69 (68%), Positives = 59/69 (85%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 689
KV+ K K+AV+ L++LKAW+DI KVY SQR+RAGKGKMRNRRRIQR+GP II+N+D G
Sbjct: 157 KVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG 216
Query: 690 LTRAFRNIP 716
+ +AFRNIP
Sbjct: 217 IIKAFRNIP 225
Score = 102 bits (244), Expect = 1e-20
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +3
Query: 42 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 222 HQTSAESWGTG 254
HQTSAESWGTG
Sbjct: 60 HQTSAESWGTG 70
Score = 96.3 bits (229), Expect = 7e-19
Identities = 41/45 (91%), Positives = 41/45 (91%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 42.3 bits (95), Expect = 0.011
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVAAK 513
++AA+ +PALV ++GH IE++PELPLVV K
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDK 157
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 91.9 bits (218), Expect = 1e-17
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 185 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWH 229
Score = 83.4 bits (197), Expect = 5e-15
Identities = 39/62 (62%), Positives = 47/62 (75%)
Frame = +3
Query: 69 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 248
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 249 TG 254
TG
Sbjct: 186 TG 187
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 91.1 bits (216), Expect = 3e-17
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = +3
Query: 51 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 230
+RP VSV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 231 SAESWGTG 254
SAESWGTG
Sbjct: 62 SAESWGTG 69
Score = 86.2 bits (204), Expect = 7e-16
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 67 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWH 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +3
Query: 519 EINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN---KDQG 689
+I + A L+ + A D+ KV S++LRAGKGK+R RR QR+GPL++++ +
Sbjct: 162 KIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKE 221
Query: 690 LTRAFRNIP 716
L RAFRN+P
Sbjct: 222 LVRAFRNLP 230
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVV 504
++AA+GVPAL+ ARGH I ++ E+PLV+
Sbjct: 126 ALAASGVPALLFARGHQISEVAEVPLVI 153
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 87.8 bits (208), Expect = 2e-16
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 689
KV+ K K+ V+ L++LKAW+DI KVY SQR+RAGKGKMRNRR IQR+G II+N+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 690 LTRA 701
+ +A
Sbjct: 158 IIKA 161
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 147 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 254
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTG
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTG 60
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 86.2 bits (204), Expect = 7e-16
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 44 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWH 88
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Frame = +3
Query: 522 INKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG---L 692
I K AV L+ + A +D K S++LRAGKGK+R RR QR+GPL+I+N D+ L
Sbjct: 140 IRKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKEL 199
Query: 693 TRAFRNIP 716
+AFRNIP
Sbjct: 200 VKAFRNIP 207
Score = 39.9 bits (89), Expect = 0.061
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVAA 510
++AA+G PAL+ ARGH + +PE+PLV+++
Sbjct: 103 ALAASGSPALLMARGHNVSTVPEVPLVISS 132
Score = 35.9 bits (79), Expect = 1.00
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 180 KNSRQPYCVSKEAGHQTSAESWGTG 254
++++ V +AGHQTSAESWGTG
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTG 46
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 83.8 bits (198), Expect = 4e-15
Identities = 37/65 (56%), Positives = 53/65 (81%)
Frame = +3
Query: 522 INKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 701
I K +AV L++L A++DI KV S+ +R+GKGKMRNRR +QR+GPL+++++D G+TRA
Sbjct: 164 IKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRA 223
Query: 702 FRNIP 716
FRNIP
Sbjct: 224 FRNIP 228
Score = 39.9 bits (89), Expect = 0.061
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVV 504
++AA+ VP+L+ ARGH +E +PE+PLVV
Sbjct: 130 AIAASAVPSLLLARGHRVEGVPEVPLVV 157
Score = 35.9 bits (79), Expect = 1.00
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 99 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 185
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 81.4 bits (192), Expect = 2e-14
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +3
Query: 42 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
++ ARP+VSV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS +AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 222 HQTSAESWGTG 254
HQ SAESWGTG
Sbjct: 61 HQHSAESWGTG 71
Score = 72.5 bits (170), Expect = 9e-12
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRV GT RSGQGAFGNMCRGG MF+P K +RR+H
Sbjct: 69 GTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFH 113
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRL-KAWSDILK-VYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 677
S ++Q INK AV F + K + +K + S +R GKGKMRNRRR+ GPL+++
Sbjct: 156 SNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYA 215
Query: 678 KDQGLTRAFRNI 713
+D G+ +A RNI
Sbjct: 216 EDNGIVKAMRNI 227
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVVA 507
+ ++AATG P+LV ARGH I +PELPLV++
Sbjct: 125 VAAAIAATGCPSLVMARGHRINNVPELPLVIS 156
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 80.6 bits (190), Expect = 4e-14
Identities = 35/44 (79%), Positives = 36/44 (81%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRW 376
G AVARIPRV GGGTHR+GQ AFGNMCRGG MF PTK WRRW
Sbjct: 68 GTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRW 111
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/71 (47%), Positives = 46/71 (64%)
Frame = +3
Query: 42 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 222 HQTSAESWGTG 254
++TSAESWGTG
Sbjct: 60 YETSAESWGTG 70
Score = 64.1 bits (149), Expect = 3e-09
Identities = 32/74 (43%), Positives = 46/74 (62%)
Frame = +3
Query: 495 LGCSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 674
L S ++ + K K A+ FL L ++ ++ KS +LRA GKMRNR+ GPLII+
Sbjct: 152 LVASNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIY 211
Query: 675 NKDQGLTRAFRNIP 716
+ D G+ +AFRNIP
Sbjct: 212 SXDSGIKKAFRNIP 225
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVA 507
S+AA+G+ +LV ARGH I + E+PLV +
Sbjct: 127 SIAASGITSLVLARGHRISNLKEVPLVAS 155
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 80.6 bits (190), Expect = 4e-14
Identities = 40/68 (58%), Positives = 48/68 (70%)
Frame = +3
Query: 51 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 230
ARP VSVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++ +G
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 231 SAESWGTG 254
SA SWGTG
Sbjct: 62 SAHSWGTG 69
Score = 80.2 bits (189), Expect = 5e-14
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPR+ GGGT SG GAFGNMCRGGRMFAPTK +RRWH
Sbjct: 67 GTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/67 (46%), Positives = 48/67 (71%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
+Q K K+A+ FL+ + A D+ +V S+ +RAG+GKMRNRR + R+GP+++ ++G
Sbjct: 157 IQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG- 215
Query: 693 TRAFRNI 713
TRAFRNI
Sbjct: 216 TRAFRNI 222
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVV 504
++AA+ VP+LV +RGH I +PE+PLVV
Sbjct: 126 ALAASSVPSLVMSRGHQIGNVPEVPLVV 153
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 77.8 bits (183), Expect = 2e-13
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 48 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 227
V RP+VSV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 228 TSAESWGTG 254
TSA SWGTG
Sbjct: 61 TSARSWGTG 69
Score = 74.1 bits (174), Expect = 3e-12
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G A++R PRV+GGGTHRSGQ A+ N CR G MFAPT+ WR WH
Sbjct: 67 GTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWH 111
Score = 38.3 bits (85), Expect = 0.19
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVV 504
L SVAAT LV +RGH +E +PELPLV+
Sbjct: 123 LAVSVAATASVPLVMSRGHRVESVPELPLVL 153
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 77.4 bits (182), Expect = 3e-13
Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NK 680
S+ + I K KQAV L+++ A+SD+LKV S+ +RAG+GKMR R+ +RKGPL+++ N
Sbjct: 156 SKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGND 215
Query: 681 DQGLTRAFRNIP 716
D +AFRNIP
Sbjct: 216 DLQAVKAFRNIP 227
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = +3
Query: 51 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 230
+RP V++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 231 SAESWGTG 254
SA SWGTG
Sbjct: 63 SAISWGTG 70
Score = 62.5 bits (145), Expect = 1e-08
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRW 376
G AVARIPR+ G G+ R+GQGAFGNM R G MF+P K +R+W
Sbjct: 68 GTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKW 111
Score = 41.5 bits (93), Expect = 0.020
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 424 VAATGVPALVQARGHIIEKIPELPLVVAAK 513
+AA+ VPALV ARGH I +P++PLVV +K
Sbjct: 128 IAASAVPALVSARGHHIAGVPQIPLVVNSK 157
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 76.2 bits (179), Expect = 8e-13
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G A+AR+PRV+GGGTHR+GQ A+ N CR G M+APT+ WRRWH
Sbjct: 67 GTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWH 111
Score = 72.9 bits (171), Expect = 7e-12
Identities = 38/67 (56%), Positives = 45/67 (67%)
Frame = +3
Query: 54 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 233
RP VSV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTS
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 234 AESWGTG 254
A SWGTG
Sbjct: 63 ARSWGTG 69
Score = 33.5 bits (73), Expect = 5.3
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVV 504
L ++AAT V +V +RGH IE + E+P+VV
Sbjct: 123 LASALAATAVVPVVMSRGHRIEALREVPMVV 153
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/45 (73%), Positives = 33/45 (73%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRV G GTHRSGQ AFGN CR GRM P K WRRWH
Sbjct: 69 GTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWH 113
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = +3
Query: 57 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 233
PLVSV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q S
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 234 AESWGTG 254
AESWGTG
Sbjct: 65 AESWGTG 71
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQ 686
K++ K A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 158 KIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENA 217
Query: 687 GLTRAFRNIP 716
L +AFRN+P
Sbjct: 218 KLLKAFRNVP 227
Score = 40.3 bits (90), Expect = 0.046
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVAAK 513
+VAATG+ LV ARGH I ++P++PLVV K
Sbjct: 128 AVAATGIVPLVLARGHRISQVPQIPLVVEDK 158
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 74.1 bits (174), Expect = 3e-12
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AV+R+PRV G GTHRSGQGA N CRGGR+F PT WR+WH
Sbjct: 63 GTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWH 107
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/47 (57%), Positives = 31/47 (65%)
Frame = +3
Query: 114 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 254
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTG
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTG 65
Score = 40.3 bits (90), Expect = 0.046
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
+++I K + + L L + I++ ++L++GKGKMRNRR + GPL++F +
Sbjct: 153 IEKIPKTRDLIKILTTLGI-NSIVRNKLKRKLKSGKGKMRNRRFKKPTGPLLVFKNNLKS 211
Query: 693 TRAFRNI 713
R NI
Sbjct: 212 LRNIANI 218
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S V++I K K+AV L LKA D+ +S+R+R G GK RNRR QR+G LI+ +++
Sbjct: 155 SDDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQN 214
Query: 684 QGLTRAFRNI 713
+GL AFRNI
Sbjct: 215 EGLANAFRNI 224
Score = 67.7 bits (158), Expect = 3e-10
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVAR+PR+ G GT R+GQ AF N RGG M++P K WRRWH
Sbjct: 68 GTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWH 112
Score = 60.1 bits (139), Expect = 5e-08
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +3
Query: 60 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 239
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+ AGHQ SAE
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 240 SWGTG 254
SWGTG
Sbjct: 66 SWGTG 70
Score = 39.9 bits (89), Expect = 0.061
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVA 507
++AA+ P+LV ARGH I+ +PELPLVV+
Sbjct: 127 AIAASSNPSLVLARGHKIDNVPELPLVVS 155
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRW 376
G A+AR+PRV+GGGT R+GQGAF N CR GRM PTK RRW
Sbjct: 65 GTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRW 108
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/64 (48%), Positives = 36/64 (56%)
Frame = +3
Query: 63 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 242
++ Y TV+ LP VF PIR DLV + +RQPY VSK AG Q SAES
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 243 WGTG 254
WGTG
Sbjct: 64 WGTG 67
Score = 56.4 bits (130), Expect = 7e-07
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S + + K K AV LR L ++ +V KS+ +R GKGKMRNRR QRKG LI+ +
Sbjct: 152 SDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGES 211
Query: 684 QGLTRAFRNI 713
+ FRNI
Sbjct: 212 SEML-GFRNI 220
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 64.1 bits (149), Expect = 3e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
VQEI + + AV L+++ + D+ +V R+ KGK R +KGPL+I+N+D+G+
Sbjct: 155 VQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGI 214
Query: 693 TRAFRNIP 716
+AFRNIP
Sbjct: 215 VKAFRNIP 222
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/69 (37%), Positives = 46/69 (66%)
Frame = +3
Query: 48 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 227
++R V+V +++ + + + LP VF PIR ++V +V+V+++KN++QP+ AG +
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKK 58
Query: 228 TSAESWGTG 254
SA SWGTG
Sbjct: 59 VSAISWGTG 67
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRW 376
G A A +PRV G G++R+GQGA+ N CRGG F P RRW
Sbjct: 65 GTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRW 108
Score = 40.3 bits (90), Expect = 0.046
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +1
Query: 379 PSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPLVV 504
PSRQ A + ++AAT V LVQARGH++ ++ E+P+VV
Sbjct: 113 PSRQRKFA---IASAIAATAVVPLVQARGHVLGEVKEVPIVV 151
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 62.9 bits (146), Expect = 8e-09
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQ 686
K++ K K A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 4 KIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFNENA 63
Query: 687 GLTRAFRNIP 716
L +AFRN+P
Sbjct: 64 KLLKAFRNVP 73
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +3
Query: 522 INKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 701
+ K K A+ ++ + D+ + S+ +RAG+GKMRNRR I RKGPL+I+N + + R
Sbjct: 149 VTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED-VARG 207
Query: 702 FRNIP 716
FRN+P
Sbjct: 208 FRNLP 212
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = +3
Query: 57 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 236
P V V+ V A P P VF P+RPD++N VH + K R PY VS+ AG Q +A
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60
Query: 237 ESWGTG 254
SWG G
Sbjct: 61 HSWGPG 66
Score = 36.7 bits (81), Expect = 0.57
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +2
Query: 257 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRW 376
AVAR+PR GG GA+ N RGG M PT RRW
Sbjct: 68 AVARLPRKHGG------IGAYANFARGGHMAHPTTVIRRW 101
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVV 504
+ ++AA+ ALV+ARGH I +P +PLVV
Sbjct: 114 VASALAASANAALVEARGHRIADVPSIPLVV 144
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 635
KV+ K ++AV+ L++LKAW+DI KVY SQR+RAGKGKMRN
Sbjct: 20 KVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 516 QEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-L 692
+ + K A+ L++ A+ D K S + GKGKMRNRR I RKGPLI++ + L
Sbjct: 22 ESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISRKGPLIVYGMEGAKL 81
Query: 693 TRAFRNIP 716
+AFRNIP
Sbjct: 82 VKAFRNIP 89
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 57.6 bits (133), Expect = 3e-07
Identities = 22/71 (30%), Positives = 44/71 (61%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S +++ + + K R + ++D+ + + +R RAG+GKMR RR +++K L++ KD
Sbjct: 142 SNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKD 201
Query: 684 QGLTRAFRNIP 716
G+ +A +N+P
Sbjct: 202 DGVVKAAKNLP 212
Score = 37.9 bits (84), Expect = 0.25
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 114 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 254
LP VF RPD++ +++ + RQPY + +G S E+WG G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPG 64
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 56.8 bits (131), Expect = 5e-07
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 689
+++ +NK ++ F + + W+D+ + ++R+RAGKGK R RR ++ K LI+ ++D+G
Sbjct: 151 ELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEG 210
Query: 690 LTRAFRNIP 716
+ RN P
Sbjct: 211 IKLGARNHP 219
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +3
Query: 57 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 236
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY AG +TSA
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSA 58
Query: 237 ESWGTG 254
ESWG G
Sbjct: 59 ESWGAG 64
Score = 37.5 bits (83), Expect = 0.33
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 406 SGLGGSVAATGVPALVQARGHIIEKIPELPLVV 504
+ L ++AAT P V+ RGH+I+ +P LP+VV
Sbjct: 116 AALRSALAATAKPEFVKERGHVIDDVPHLPVVV 148
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 56.0 bits (129), Expect = 9e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 260 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
+ARIPR++G GT ++GQGA NMCRGGR+F ++W+
Sbjct: 74 LARIPRIKGSGTRKAGQGALANMCRGGRLFGNRNYSKKWN 113
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
V+ INK K A+ L+ L + DI + + + +RAG+GKMR RR Q K LI+ +
Sbjct: 149 VEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSSAM 208
Query: 693 TRAFRNIP 716
+AFR++P
Sbjct: 209 -KAFRSLP 215
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQG 689
++++ K K+ L +L ++ +VY+ +R RAGKGK R R I+RKGPLI+ N ++
Sbjct: 159 LEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQ 217
Query: 690 LTRAFRNIP 716
L +A NIP
Sbjct: 218 LFKAVDNIP 226
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 48.0 bits (109), Expect = 2e-04
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = +3
Query: 510 KVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 689
+++ + K+ + L DI++ K +++++GKGK+R R+ KGPL++ D+G
Sbjct: 147 EIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRG 206
Query: 690 LTRAFRN 710
++ RN
Sbjct: 207 ISLGARN 213
Score = 42.3 bits (95), Expect = 0.011
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +3
Query: 63 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 242
++VYS K + + LP +F+ RPD++ +SM QP+ AG +T+AES
Sbjct: 4 INVYSLKGDITEEIE--LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAES 61
Query: 243 WGTG 254
+G+G
Sbjct: 62 FGSG 65
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 462 RTHY*KDS-RASLGCSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 638
R H KDS R + + + + + FL+++ + D+ +V + R+RAGKGKMR R
Sbjct: 136 RGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGR 195
Query: 639 RRIQRKGPLII-FNKDQGLTRAFRNI 713
+ + GPLII + + + +A RN+
Sbjct: 196 KYKEPIGPLIIVHDSNSPIIKAARNL 221
Score = 40.3 bits (90), Expect = 0.046
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 114 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 248
LP +F P+R DL+ V ++ +S QP AG +TSAES+G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFG 69
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 516 QEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQGL 692
++IN+ K+A L W D+ + + ++RAGKGKMR RR + K L++ + + L
Sbjct: 176 EKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPL 235
Query: 693 TRAFRNIP 716
A RN P
Sbjct: 236 IAAVRNFP 243
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVV 504
++AAT + V ARGH++EK+P LP+VV
Sbjct: 144 AIAATAYRSWVAARGHVVEKVPSLPVVV 171
Score = 37.5 bits (83), Expect = 0.33
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 117 PFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGV 257
P F PIRPDL+ ++S QP V + AG + S ES+G G+
Sbjct: 45 PLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGL 91
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 43.6 bits (98), Expect = 0.005
Identities = 28/74 (37%), Positives = 32/74 (43%)
Frame = +1
Query: 172 LCPRTRGSPTA*ARRLVTKPVLNHGVLECCRPNSACPWWWYS*VRSGCLR*HVSWWTYVR 351
L P RG P R ++ H C SA W VR C+R HV WW +VR
Sbjct: 99 LAPGVRGEPPV--RHEPLGALVGHRPRRCAY--SAHQRRWNEHVRRRCVRQHVPWWPHVR 154
Query: 352 PHEALAALAPSRQP 393
E L LAP QP
Sbjct: 155 ADEDLPPLAPQDQP 168
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 40.3 bits (90), Expect = 0.046
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 534 KQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNI 713
++ V + L +D+ + + +RAGKG MR R+ K L++ ++ GL +A RNI
Sbjct: 208 RKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARNI 267
Query: 714 P 716
P
Sbjct: 268 P 268
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 39.9 bits (89), Expect = 0.061
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 114 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 254
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+G
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSG 64
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 36.7 bits (81), Expect = 0.57
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S + +I+ ++A L + + D+L+ + +R AGKGKMR RR K L +
Sbjct: 157 SSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDP 216
Query: 684 QG-LTRAFRNIP 716
+ L A + +P
Sbjct: 217 RSPLALAVKGMP 228
Score = 35.1 bits (77), Expect = 1.7
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 60 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 239
+V VY E+ LP +F+ P+R DL+ +S QP AG +TSA
Sbjct: 15 IVPVYDERGGEKDSVV--LPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAV 72
Query: 240 SWGTG 254
S G G
Sbjct: 73 SLGVG 77
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 263 ARIPRVRGGGTHRSGQGAFGNMCRGG 340
AR PR GGG HR GA G + RGG
Sbjct: 201 ARRPRAAGGGKHRGAHGANGGVARGG 226
>UniRef50_UPI0000E47A9F Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 468
Score = 35.1 bits (77), Expect = 1.7
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -1
Query: 437 PVAATLPPRPLSXXXXXXXXXXXXXASWGRTYVHHDTCYRRHPDRTYEYHHHG-HAEFGR 261
P+A +PP PL + R HH + HP + HHH ++ GR
Sbjct: 356 PIAFAVPPPPLHTSTTTKHNSWHSGVATSR---HHQ---QYHPPHHQQQHHHNKNSSQGR 409
Query: 260 QHSSTP*FS-TGLVTSLLAHAVGLPRVLGHRN 168
H++ P S G TS + G PR + H N
Sbjct: 410 HHNNIPFRSHQGRNTSYNSSNYGKPRFIPHMN 441
>UniRef50_UPI000058888F Cluster: PREDICTED: similar to
ENSANGP00000014064; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000014064
- Strongylocentrotus purpuratus
Length = 300
Score = 35.1 bits (77), Expect = 1.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 335 HDTCYRRHPDRTYEYHHHGHAEFGRQHS 252
H+ YR H + +HHHGH+ G H+
Sbjct: 106 HERAYRPHSNSDGHHHHHGHSHHGHSHA 133
>UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_113, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 33.9 bits (74), Expect = 4.0
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 424 VAATGVPALVQARGHIIEKIPELPLVV 504
+A + V +LV ARGH IE + ELPLV+
Sbjct: 13 IATSAVLSLVMARGHRIESVLELPLVI 39
>UniRef50_Q9VJJ9 Cluster: CG31738-PB, isoform B; n=3; Drosophila
melanogaster|Rep: CG31738-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 1700
Score = 33.9 bits (74), Expect = 4.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 353 GRTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHSSTP*FSTGLVTSLLAHAVGLPRVL 180
G T HH + H + HH H G S++ + ++S LA A GL R++
Sbjct: 1601 GATDSHHQHQHHMHHSHHMHHAHHPHTGMGGSSSNSSSSTAAAISSSLAQAGGLRRIV 1658
>UniRef50_UPI0000E1F6E9 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 539
Score = 33.1 bits (72), Expect = 7.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 346 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIP 486
+RP + ALAP+ +PP S G A G P L+ A G +++ +P
Sbjct: 151 LRPSSRIRALAPAPRPPLLPSAQG---APHGQPTLICAPGSLLQPLP 194
>UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein, partial - Pan troglodytes
Length = 366
Score = 32.7 bits (71), Expect = 9.3
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 203 REQGGWSPNQC*IMGYWSAVARIPRVRGGGT-HRSGQGAFGNMCRGGRMFAPTKPWR 370
R QGG P + G A+A + RGGG RSG+G+ C G + P PWR
Sbjct: 244 RRQGGKKPQKAAAAGGQKALAAGAKSRGGGAKSRSGRGS--KRCGGQK---PLAPWR 295
>UniRef50_Q0S4B0 Cluster: Putative uncharacterized protein; n=2;
Rhodococcus sp. RHA1|Rep: Putative uncharacterized
protein - Rhodococcus sp. (strain RHA1)
Length = 449
Score = 32.7 bits (71), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 379 PSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIP 486
P+ P + +GG A GVPAL+ G +I +P
Sbjct: 114 PAMSAPDVGTAIGGLAALPGVPALISGLGSLIPSVP 149
>UniRef50_A1GG39 Cluster: Putative uncharacterized protein; n=2;
Actinomycetales|Rep: Putative uncharacterized protein -
Salinispora arenicola CNS205
Length = 654
Score = 32.7 bits (71), Expect = 9.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 353 GRTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHSSTP 243
G+ + DT + R R++ +H H HA GR+ S+ P
Sbjct: 198 GQPFHRGDTGHLRRAARSWPHHRHDHARAGRRRSNPP 234
>UniRef50_A0GGU8 Cluster: Putative uncharacterized protein; n=1;
Burkholderia phytofirmans PsJN|Rep: Putative
uncharacterized protein - Burkholderia phytofirmans PsJN
Length = 753
Score = 32.7 bits (71), Expect = 9.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 350 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQ 258
R + HHD C R R ++HHHGH GR+
Sbjct: 478 RDHHHHDRCLRDR--RRRDHHHHGHRLRGRR 506
>UniRef50_Q7F729 Cluster: OSJNBa0004B13.22 protein; n=2; Oryza
sativa (japonica cultivar-group)|Rep: OSJNBa0004B13.22
protein - Oryza sativa subsp. japonica (Rice)
Length = 248
Score = 32.7 bits (71), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 372 VGTVASTSDSGERPWRQRCCYRRPSARS 455
+GT AS G+RPW R C+ R RS
Sbjct: 106 IGTAASIFSGGQRPWACRSCHLRGGCRS 133
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,516,145
Number of Sequences: 1657284
Number of extensions: 13915993
Number of successful extensions: 45953
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 42365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45580
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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