Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021135
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 99 3e-22
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 99 5e-22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 4.7
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 6.2
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 8.2
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 99 bits (238), Expect = 3e-22
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = +3
Query: 42 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 222 HQTSAESWGTG 254
HQTSAESWGTG
Sbjct: 60 HQTSAESWGTG 70
Score = 94.7 bits (225), Expect = 1e-20
Identities = 39/68 (57%), Positives = 55/68 (80%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
VQ K K+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+
Sbjct: 158 VQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI 217
Query: 693 TRAFRNIP 716
+AFRNIP
Sbjct: 218 VKAFRNIP 225
Score = 86.2 bits (204), Expect = 4e-18
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G A+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVV 504
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 99.1 bits (236), Expect = 5e-22
Identities = 45/71 (63%), Positives = 55/71 (77%)
Frame = +3
Query: 42 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 222 HQTSAESWGTG 254
HQTSAESWGTG
Sbjct: 60 HQTSAESWGTG 70
Score = 95.1 bits (226), Expect = 9e-21
Identities = 39/68 (57%), Positives = 55/68 (80%)
Frame = +3
Query: 513 VQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 692
VQ K K+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+
Sbjct: 158 VQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI 217
Query: 693 TRAFRNIP 716
+AFRNIP
Sbjct: 218 VKAFRNIP 225
Score = 86.2 bits (204), Expect = 4e-18
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G A+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVV 504
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVV 154
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 343 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH-IIEKIPELPL 498
+ PH L + AP QP E +V P+ +GH I + PL
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVATPPL 906
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 103 APCTVSLFSEYTDTKGRATDRLISLL 26
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 9/37 (24%)
Frame = +3
Query: 507 RKVQEINKIKQ---------AVIFLRRLKAWSDILKV 590
RKVQEIN+I++ A++++ RL+ W+ I K+
Sbjct: 185 RKVQEINEIRKAMESSNWDSALLYVNRLRYWNTIDKI 221
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1
Query: 302 TYEYHHHGHAEFGRQHSS 249
T++Y HH H G H S
Sbjct: 19 THDYDHHNHDHHGHDHHS 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,698
Number of Sequences: 5004
Number of extensions: 49286
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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