Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021135
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 90 1e-18
07_01_0578 + 4295386-4296489,4297394-4297507 90 2e-18
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.6
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.8
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 29 3.7
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.7
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.5
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 8.5
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 8.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/45 (84%), Positives = 40/45 (88%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +3
Query: 45 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 221
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 222 HQTSAESWGTG 254
HQTSAESWGTG
Sbjct: 63 HQTSAESWGTG 73
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S ++ I K Q++ L+++ A++D K S +RAGKGKMRNRR I RKGPLI++ +
Sbjct: 158 SDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTE 217
Query: 684 -QGLTRAFRNIP 716
+ +AFRN+P
Sbjct: 218 GSKVVKAFRNLP 229
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVVA 507
+ ++AAT VP+LV ARGH IE +PE PLVV+
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVS 158
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 72 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 77.8 bits (183), Expect = 8e-15
Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Frame = +3
Query: 54 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 227
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 228 TSAESWGTG 254
TSAESWGTG
Sbjct: 66 TSAESWGTG 74
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
S + I K QA+ L+++ A++D K S +R GKGKMRNRR I RKGPLI++ +
Sbjct: 159 SDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTE 218
Query: 684 -QGLTRAFRNIP 716
+ +AFRN+P
Sbjct: 219 GSKIVKAFRNLP 230
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVVA 507
+ ++AAT VP+LV ARGH IE +PELPLV++
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVIS 159
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +2
Query: 17 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 172
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 17 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 172
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +2
Query: 242 MGYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFA-----PTKPW 367
+G+WS + GG +HR G G G C F P KPW
Sbjct: 425 LGFWSPEHGFSKSAGGCSHRGGDG--GGECEPSMRFLGPVIWPGKPW 469
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 486 RASLG-CSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 662
RA++G C R Q +N + ++ + L ++S+ LK + GKG N + P
Sbjct: 1509 RAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVNGKGVRSNGSETSNRQP 1568
Query: 663 LIIFNKDQGLTRAFR 707
KD+G +R R
Sbjct: 1569 -----KDKGFSRKTR 1578
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 359 SWGRTYVHHDTCYRRHPDRTYEYHH 285
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 236 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 105
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 203 REQGGWSPNQC*IMGYWSAVARIPRVRGGGT--HRSGQGAF 319
R + GW +Q + + R P +GGG R GQG F
Sbjct: 1121 RREQGWDAHQAQVGAQHQNLPRFPPQQGGGNIGERQGQGQF 1161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,141
Number of Sequences: 37544
Number of extensions: 431685
Number of successful extensions: 1644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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