Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021135
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    88   5e-18
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/71 (56%), Positives = 52/71 (73%)
 Frame = +3

Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
           S KV+   K K+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213

Query: 684 QGLTRAFRNIP 716
               RAFRNIP
Sbjct: 214 AECARAFRNIP 224



 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 38/45 (84%), Positives = 39/45 (86%)
 Frame = +2

Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
           G   AVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 37/68 (54%), Positives = 47/68 (69%)
 Frame = +3

Query: 51  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 230
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 231 SAESWGTG 254
           SAESWGTG
Sbjct: 62  SAESWGTG 69



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 18/34 (52%), Positives = 30/34 (88%)
 Frame = +1

Query: 412 LGGSVAATGVPALVQARGHIIEKIPELPLVVAAK 513
           +  ++AA+G+PAL+QARGH+I+++ E+PLVV+ K
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDK 156


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 338 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 255
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,479
Number of Sequences: 27780
Number of extensions: 302624
Number of successful extensions: 975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)