Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021135
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.41 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = -1

Query: 338 HHDTCYRRHPD-RTYEYHHHGHAEFGRQHSSTP 243
           HH T    H       +HHH HA       STP
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 219 GHQTSAESWGTGVL 260
           GH  SA+ W  GVL
Sbjct: 541 GHDISADYWSLGVL 554


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 305 GQGAFGNMCRGGRMFAP 355
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,756
Number of Sequences: 438
Number of extensions: 3439
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)