Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021134
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 114 6e-26
07_01_0578 + 4295386-4296489,4297394-4297507 114 8e-26
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.058
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.6
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636... 30 2.2
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.2
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 30 2.2
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 30 2.2
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.9
05_03_0163 + 9070781-9071320 29 3.8
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 5.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.8
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 8.8
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 28 8.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 114 bits (275), Expect = 6e-26
Identities = 48/53 (90%), Positives = 51/53 (96%)
Frame = +2
Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
+QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3
Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRKG 692
+PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKG
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209
Query: 693 PLIIFNKD 716
PLI++ +
Sbjct: 210 PLIVYGTE 217
Score = 54.4 bits (125), Expect = 9e-08
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 78 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 445 LGGSVAATGVPALVQARGHIIERFPSFP 528
+ ++AAT VP+LV ARGH IE P FP
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP 154
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 114 bits (274), Expect = 8e-26
Identities = 47/53 (88%), Positives = 51/53 (96%)
Frame = +2
Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
+QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 64 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRKG 692
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 693 PLIIFNKD 716
PLI++ +
Sbjct: 211 PLIVYGTE 218
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +3
Query: 87 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AG
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAG 63
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 445 LGGSVAATGVPALVQARGHIIERFPSFP 528
+ ++AAT VP+LV ARGH IE P P
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELP 155
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +2
Query: 236 REQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 376
RE GG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGG----GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 205
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>09_03_0046 +
11862923-11863112,11863225-11863406,11863522-11863634,
11863894-11864140,11864333-11864452,11864601-11864604,
11864800-11864846,11864992-11865068,11865381-11865431,
11865519-11865567,11865694-11865718,11866226-11866344
Length = 407
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 394 ALAALAPSRQPPTAESG--LGGSVAATGVPALVQARGHIIERFPSFPWL*PTKSKRSTRP 567
A+AAL + P A + G AA G+P LV+A I P+L P S +
Sbjct: 10 AIAALLRAAHVPPAPRARSIRGLAAARGLPPLVRATAAAIAPSSFCPYL-PRLSSARSFS 68
Query: 568 NRLSSS*GASRHGLIS 615
+ S S GAS G +S
Sbjct: 69 SSTSCSAGASLGGAVS 84
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 264
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 221 EAALLREQGGWYQTSAESWGTGRAV 295
EAALLR G W + + + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 335 TYEYHH-HGHAEFGRQHVQYPMIQHWFGTSLLAHAVGLPRVLGH 207
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAG-GMVNYGGGAPYYAAH 184
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 205
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>05_03_0163 + 9070781-9071320
Length = 179
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 236 REQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQG 346
R GGW Q AE WG G ++ GGG RS +G
Sbjct: 15 RGAGGWSQR-AEGWGGGGGRSQRAEGGGGGGGRSRRG 50
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 128 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGWYQTSAESWGTGRAVARIP 307
+G ++A + + P GP ++ +++L A RE + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 308 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 406
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 392 SWGRTYVHHDTCYRRHPDRTYEYHH 318
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 245 GGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 358
GG++ +G GR RGGG R G+G G+
Sbjct: 169 GGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 212 QELEAALLREQGGWYQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 376
+++ A ++GG S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 377 MFAPTKP-WR 403
M P P WR
Sbjct: 123 MLRPGFPKWR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,358
Number of Sequences: 37544
Number of extensions: 474391
Number of successful extensions: 1796
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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