Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021134
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   5e-24
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    28   7.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (259), Expect = 5e-24
 Identities = 47/52 (90%), Positives = 48/52 (92%)
 Frame = +2

Query: 257 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/74 (54%), Positives = 55/74 (74%)
 Frame = +3

Query: 510 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRK 689
           ++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S R RAGKGK+RNR+  Q+ 
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKL 204

Query: 690 GPLIIFNKDQGLTR 731
           GP++I+ +D    R
Sbjct: 205 GPVVIYGQDAECAR 218



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 84  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 445 LGGSVAATGVPALVQARGHIIERFPSFP 528
           +  ++AA+G+PAL+QARGH+I++    P
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVP 150


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 683 LDTTTVAHFTLTSTKTMRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 531
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 288
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 540 RLQPREARESFNNVSSSLNER 478
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 168 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGTKPVLNHGVLDVLS 296
           P + D ++DVH+S S    Q     K     P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 534 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSH-RLRAGKGKMRNRRRIQRKGPLIIFN 710
           V   V E+ KTK  VI  + LKA ++ +K  K   R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 711 KD 716
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 534 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSH-RLRAGKGKMRNRRRIQRKGPLIIFN 710
           V   V E+ KTK  VI  + LKA ++ +K  K   R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 711 KD 716
           KD
Sbjct: 473 KD 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,935
Number of Sequences: 27780
Number of extensions: 337239
Number of successful extensions: 1135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)