Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021134
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   112   3e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   112   3e-25
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    31   0.79 
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    30   1.8  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   3.2  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   3.2  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    29   3.2  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    29   4.2  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   7.3  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   7.3  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   9.7  
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    27   9.7  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   9.7  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    27   9.7  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  112 bits (269), Expect = 3e-25
 Identities = 47/53 (88%), Positives = 50/53 (94%)
 Frame = +2

Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           +QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +3

Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRKG 692
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKG
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 212

Query: 693 PLIIFNKD 716
           PL++F  +
Sbjct: 213 PLVVFGTE 220



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 78  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 251
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 252 G 254
           G
Sbjct: 65  G 65



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 454 SVAATGVPALVQARGHIIERFPSFP 528
           ++AAT VPALV ARGH IE  P  P
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMP 157


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  112 bits (269), Expect = 3e-25
 Identities = 47/53 (88%), Positives = 50/53 (94%)
 Frame = +2

Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           +QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 65  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/68 (45%), Positives = 46/68 (67%)
 Frame = +3

Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRKG 692
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKG
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 211

Query: 693 PLIIFNKD 716
           PL+++  +
Sbjct: 212 PLVVYGTE 219



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
 Frame = +3

Query: 69  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 242
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 243 KEAG 254
           K+AG
Sbjct: 61  KKAG 64



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 454 SVAATGVPALVQARGHIIERFPSFP 528
           ++AAT VPALV ARGH IE  P  P
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMP 156


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +3

Query: 93  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGTKPVLN 272
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+      + V  
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICIYALGRMRSVWG 408

Query: 273 HGVLDVLSPE 302
              LD   PE
Sbjct: 409 EDALD-FKPE 417


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 571 CLVLLISWTLSATTKGSSGIFQ*CV 497
           CLVLL+S   +A TK  SGIF  C+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFTGCL 33


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 383 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 264
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 383 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 264
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGTKPVLNHGVLDVLSPE 302
           P+PF  K+P +PD++   H  +  NSR  +C+      K V     ++   PE
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCLYSLGRMKSVWGEDAME-FKPE 434



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 144  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGTKPVLNHGVLDVLSPE 302
            P+PF  K+P +PD++   H  +  NS+  +C+      K V     L+   PE
Sbjct: 857  PVPFQHKSPTKPDVLPSGH-KVDANSKILFCLYSLGRMKSVWGEDALE-FKPE 907


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 245 GGWYQTSAESW--GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 373
           GG YQ     +  G GR      R +GGG  + G G+ G+ CR G
Sbjct: 75  GGNYQGGGGRYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGHAEF 300
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 147 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 34
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 218 LEAALLREQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 388
           +  AL+R + G   T AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 389 TKPW 400
              W
Sbjct: 135 ISKW 138


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
 Frame = -3

Query: 350 RHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGTSLLAHAVGL---PRV-LGHRNVNIID 186
           RH   +   HH  H      H Q     H F  S   H +     P   L H ++NI+D
Sbjct: 346 RHQPSSSTSHHMAHDHHHHHHQQQQQRHHAFNISQPTHPISTIISPSTSLHHASINILD 404


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 288
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 224 AALLREQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 394
           A+LL      YQ + + W    AV    R  GGG  ++   A GN+  G   FA  K
Sbjct: 297 ASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFAACK 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,469,307
Number of Sequences: 28952
Number of extensions: 327641
Number of successful extensions: 1060
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)