Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021133
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   9.5  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  

>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 155 GSVSVMGHIVGIIFVIFLYFVVKNANVPV 69
           G   ++G +VGI F I L+F    +++PV
Sbjct: 403 GRTGILGMVVGICFFISLFFAPIFSSIPV 431


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 184 NSMVNEAYENGISFAEIQNLPEKSQ*IDY 270
           NS VNE YE GI+  +I+N   + + + +
Sbjct: 745 NSFVNEIYEGGITDWKIKNFENQERRVQF 773


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 420 EDKLFPTMFTTAVSKMKNWLYLNLKDELRCKNSISS 527
           E+++   +  +AV   K W+YL+ KD    K  I +
Sbjct: 62  EEEMRTLLVASAVKDAKGWVYLSGKDVEEIKQKIKN 97


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 279 DMASKLRN-VDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAIMTPQWLEDKL 431
           D  S++R+ ++FI+ NL  E +    + +K    LD   +AI   Q   DKL
Sbjct: 215 DFPSEIRSYLEFILSNLDLECLTLCLKIIKGILTLDELQKAIKLKQTELDKL 266


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 279 DMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLD 383
           D+   L  + ++++N  DED  Y+  ALK + L+D
Sbjct: 632 DVLLDLDGLQYLVKN--DEDYSYLQEALKDEPLMD 664


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 237 EFTREVPVDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALKSKWL 377
           EFTR+    +L K   ++KL ++  I ++ +     YVS  L + WL
Sbjct: 726 EFTRQY---QLLKNISSNKLGSISGITKHKKKAARKYVSELLSNSWL 769


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 484 KYNQFFILLTAVVNIVGNSLSSNHWGVMIAS*AGSNNHFDFSARLTYNISSSRR 323
           K + F +   A + I   S S NH   +  S +   NH+   +   YN SSS R
Sbjct: 314 KIDTFSLDEAANIQIPIQSTSDNHTVTVDRSLSNDGNHWGSLSSTIYNPSSSPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,413
Number of Sequences: 5004
Number of extensions: 58306
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)