Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021133
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    32   0.34 
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   3.2  
11_04_0032 + 12545208-12545954                                         28   7.4  
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26...    28   7.4  
04_03_0376 + 15105874-15106230,15109207-15111573                       28   7.4  
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    28   7.4  
11_01_0314 + 2339241-2339728,2342720-2343608                           27   9.8  

>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 476 PVLHLADSRCK-HCRKQFIFQPLGR-HDSLMSRVQQPLRLQCSTHIQHILVSEVLDYEVY 303
           P + L D   K H  + F  Q L R ++    +   P ++ C  H+    V+E LDY+ +
Sbjct: 382 PTVLLVDCPTKYHMHELFSLQSLIRFYEDSSEQAGSPKKVNCVIHLGPSSVTEALDYQNW 441

Query: 302 VSQFG 288
           + +FG
Sbjct: 442 MRKFG 446


>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
            21800918-21800957,21801471-21801766,21802696-21802774,
            21803013-21803100,21803189-21803273,21803364-21803625,
            21803720-21805027,21806187-21806393,21807288-21807519,
            21808267-21808353,21808427-21808735,21808879-21808957,
            21809788-21809867,21809952-21810029,21810744-21810831,
            21811102-21811241,21811342-21811415,21812043-21812125,
            21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 438  TMFTTAVSKMKNWLYLNLKDELRCKNSISSTKKKNFIML*NFSY--IVLRIT*TVKSV 605
            T+   A  + K++LY  +   L C  S+  +   N +ML  FS   +VL+I  TV+++
Sbjct: 1380 TLIIHAERERKSFLYSQVAKALNCNASVDESSASNVVMLSGFSIPKLVLQIV-TVETL 1436


>11_04_0032 + 12545208-12545954
          Length = 248

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 608 SHGLHCLCNPENNVRKIS*HNEILFL 531
           SHG   LCN E N+ K++ H   +FL
Sbjct: 196 SHGAVTLCNNEGNIFKVNGHRLKVFL 221


>11_01_0036 +
           268028-268168,268734-268839,268920-269031,269126-269241,
           269321-269399,269476-269614,269689-269747,269924-270218,
           270303-270362,270502-270933
          Length = 512

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 258 VDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALK 365
           +DR F  +   K+  VD   Q  R+E M Y  + LK
Sbjct: 183 IDRQFSEETIPKMMEVDKSTQGTREEQMFYNRKTLK 218


>04_03_0376 + 15105874-15106230,15109207-15111573
          Length = 907

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +2

Query: 500 TTLQKFYQFYKEKEFHYAMKFFVHCSQDY-INSEVREILGRLSPQ 631
           TTL ++   Y+E+  H+ +  ++H SQ++ +++ +RE++ + + Q
Sbjct: 230 TTLAQYVCEYEEEANHFDIVMWIHVSQNFGLDTILREMIEQATKQ 274


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -3

Query: 428 FIFQPLGRHDSLMSRVQQPLRLQCSTHIQHILVSEVLDYEVYVSQFGRHVYLE*SIYWDF 249
           F  QPL   D  ++ + Q      + +I+++  S+++  E+    F RH+ ++  I++DF
Sbjct: 290 FEAQPLSDDDGKLNNLDQ--EEDAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLIFFDF 347


>11_01_0314 + 2339241-2339728,2342720-2343608
          Length = 458

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 378 TTTSTSVLDSHTTYPRLGGFGL*SLRF 298
           T T+TS   + TT PRLG   L  +RF
Sbjct: 35  TATTTSTTTTTTTPPRLGAVALSDIRF 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,797
Number of Sequences: 37544
Number of extensions: 328284
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)