Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021133
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   1.4  
SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)                      28   5.7  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       28   5.7  

>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +3

Query: 252 VPVDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAIMTPQWLEDKL 431
           +P +RLF         N+ F  +N+RD D  +  R  K     +  H     P ++    
Sbjct: 485 IPFNRLFVPVFRLSGENLSFEFENIRDSDARWAVRGEKD----NTRHAKFYQPGYMPLNA 540

Query: 432 FPTMFTTAVSKMKNWLYLNL 491
           F    +  V K+  W +++L
Sbjct: 541 FVGFVSRQVDKICQWRFVSL 560


>SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)
          Length = 117

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 634 VLWRQTPQDLTDFTVYVILRTMYEK-FHSIMKFFFFVELIEFLQRSSSLRFKYNQ 473
           V+W  + Q    F    +L T  EK F + + + +  E++EFL+ S+   FK+++
Sbjct: 31  VIWILSKQKYQHFQA--VLNTYIEKHFSATIAYKYVTEVMEFLKSSTECVFKFSR 83


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 634 VLWRQTPQDLTDFTVYVILRTMYEK-FHSIMKFFFFVELIEFLQRSSSLRFKYNQ 473
           V+W  + Q    F    +L T  EK F + + + +  E++EFL+ S+   FK+++
Sbjct: 600 VIWILSKQKYQHFQA--VLNTYIEKHFSATIAYKYVTEVMEFLKSSTECVFKFSR 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,105
Number of Sequences: 59808
Number of extensions: 397691
Number of successful extensions: 1069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)