Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021133
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine rece...    33   0.23 
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    29   2.9  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 645 RILKCCGDKRPKISRTSLFM*S*EQCTKNFIA**NSFSL 529
           R++ CCGD+ P ++  +LF    EQCT+  +   N F L
Sbjct: 147 RMMNCCGDQCPPVAALALFQDPDEQCTEIAMQKSNDFFL 185


>U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine
           receptor, class v protein6 protein.
          Length = 330

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -1

Query: 559 FHSIMKFFFFVELIEFLQRSSSLRF-KYNQFFILL---TAVVNIVGNSLSSNHWGVMI 398
           F  +++  F+ EL+ F++ S ++RF KY  F++L    T  + I+   +S  H+ + +
Sbjct: 39  FFKLVELQFYAELVFFIEFSITMRFRKYTDFYMLFEPDTVFIGIIPRIISGIHYYIKL 96


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 574 TMYEKFHSIMKFFFFVELIEFLQRSSSLRFKYNQFFILLTAVVNIV 437
           +M   FH I+ F  ++  +  L R SS  F   ++FI++  ++NI+
Sbjct: 16  SMMHNFH-IISFPLYIVTLNALFRESSQIFSTYKYFIIVHIIINII 60


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 553 SIMKFFFFVELIEFLQRSSSLRFKYNQFFILLTAVVNIV 437
           S++ +FF V+   F     SL F+  +FF ++   +NI+
Sbjct: 27  SLLFYFFTVDFPYFFLTKCSLNFRITKFFCVVFGSLNII 65


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 164 PRFGSVSVMGHIVGIIFVIFLYFVV----KNANVPVLMR 60
           P FG+  ++  IV I+  +FL+FV     +N  + VLMR
Sbjct: 197 PEFGTPHIIVVIVNIVVKLFLFFVCLIKRENNQIRVLMR 235


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +2

Query: 485 ESQR*TTLQKFYQFYKEKEFHYAMKFFVHCSQDYINSEVREILGRLSPQHFKIL 646
           ++Q+ +T++ FY  +   E HY +  ++  ++D + + V +IL + +    K+L
Sbjct: 555 QTQKCSTIRHFYVQHYAGEVHYNIDGWLDKNRDNVETSVLDILSQSTHPLLKLL 608


>AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1b protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 96  KVKENDKYDPHDVAHHAYRTEPWETSASTQQHGQ*SLRKRYFVC*NSEFTREVPVDRLFK 275
           K+K+ D YD H    H +   P              + + YF+C N  F +   +  +FK
Sbjct: 67  KIKDKDLYDQHTDMMHDFARNP-------------RILQNYFICKNKAFLKLCEIFEVFK 113

Query: 276 IDM 284
            D+
Sbjct: 114 FDI 116


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 96  KVKENDKYDPHDVAHHAYRTEPWETSASTQQHGQ*SLRKRYFVC*NSEFTREVPVDRLFK 275
           K+K+ D YD H    H +   P              + + YF+C N  F +   +  +FK
Sbjct: 67  KIKDKDLYDQHTDMMHDFARNP-------------RILQNYFICKNKAFLKLCEIFEVFK 113

Query: 276 IDM 284
            D+
Sbjct: 114 FDI 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,566
Number of Sequences: 27780
Number of extensions: 320127
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)