Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021133
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58350.1 68418.m07306 protein kinase family protein contains ...    29   3.5  
At5g15070.1 68418.m01766 expressed protein                             28   4.7  
At3g59770.1 68416.m06670 sacI homology domain-containing protein...    28   6.2  
At3g52320.1 68416.m05750 F-box family protein contains F-box dom...    28   6.2  
At2g02910.1 68415.m00240 expressed protein contains Pfam profile...    27   8.2  

>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 84  IFDDKVKENDKYDPHDVAHHAYRTEPWETSASTQQHGQ*SL 206
           + D K +E+D+  PHD  HH +RT+ + +S+S     Q SL
Sbjct: 389 VSDWKYEEDDE-TPHD--HHRHRTDSFHSSSSHASSSQASL 426


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +3

Query: 363  KSKWLLDPAHEAIMTPQ-WLEDKLFPTMFTTAVSKMKNWLYLNLKDELRCKNSISSTKKK 539
            ++K+ LDP +  +MTP+  +  +L+ T  +   S M    Y NL + L+ + S+      
Sbjct: 854  ETKYRLDPKYANVMTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEESLVCQSAL 913

Query: 540  NFIM----L*NFSYIVLRI 584
            + +     L   SY+VLR+
Sbjct: 914  DRLCKTKELDYMSYVVLRL 932


>At3g59770.1 68416.m06670 sacI homology domain-containing protein / WW
            domain-containing protein contains Pfam profiles PF00397:
            WW domain, PF02383: SacI homology domain; identical to
            cDNA SAC domain protein 9 (SAC9) GI:31415734
          Length = 1630

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 364  FSARLTYNISSSRRFWIMKSTFRSLDAMSILNNLSTGTSLV 242
            FS     N++SS  +W    +  S++A  +LN LS  +S++
Sbjct: 1257 FSLLTPLNLASSNAYWKAPPSADSVEAAIVLNTLSDVSSVI 1297


>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 372 TSTSVLDSHTTYPRLGGF 319
           TS SV+D H+T P +GG+
Sbjct: 105 TSVSVIDQHSTIPIMGGY 122


>At2g02910.1 68415.m00240 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 460

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 231 FSKRNTVFVSFIDHAVESKL 172
           FSKRN  FV F+D    SKL
Sbjct: 224 FSKRNVCFVMFVDEQTLSKL 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,142
Number of Sequences: 28952
Number of extensions: 284598
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)