Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021132
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    56   4e-09
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.18 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.9  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    26   6.9  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = +3

Query: 348 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 509
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  R
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHR 99


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 430 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 296
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +3

Query: 558 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 695
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 259 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 345
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 528  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 707
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 708  RL*SKPSEP 734
               +  +EP
Sbjct: 948  SSNTLSTEP 956


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 368 LQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPTFEGYCLVP 246
           LQVGS     + E   T      +L G EGL TF  +C+VP
Sbjct: 241 LQVGSKVNLRIDE-NGTL-SIQIMLVGQEGLCTFVDFCIVP 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,249
Number of Sequences: 5004
Number of extensions: 62754
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)