Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021132
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               53   2e-07
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                31   1.0  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                30   2.4  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.2  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             28   9.6  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +2

Query: 482 VPVTPHSSAYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKE 658
           VP+     +YVI TST I + + KLP+H F D+ +                +D+F    E
Sbjct: 8   VPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMFEEAAE 62

Query: 659 KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 748
           +  PSEQR  DQK VD+ ++  I A P+ K
Sbjct: 63  EKKPSEQRIADQKAVDDQILPKISAVPNMK 92


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 278 LPTFEGYCLVPPFFSPP 228
           +PT +GY LVP FFSPP
Sbjct: 528 MPTAQGYGLVPNFFSPP 544


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 459 TGPFAFNSCPLRRIPQRM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 638
           T   A N+C  RR  +++  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 639 SLPQKKRNT 665
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 459 TGPFAFNSCPLRRIPQRM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 638
           T   A N+C  RR  +++  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 639 SLPQKKRNT 665
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +3

Query: 477 NSCPLRRIPQRM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 656
           N+C  RR  +++  A       AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 657 RNTFHLSSAKPIRRQSTRL 713
           R T    +    RR++ +L
Sbjct: 134 RTTAE-GATNNCRRRNEQL 151


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 558  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 737
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 738  PTRR 749
             +RR
Sbjct: 1023 SSRR 1026


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPV 490
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  PV
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPV 129


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 712 CDQSHRSPTRQEDAPR 759
           CD+ H+ P+R+EDA R
Sbjct: 137 CDKKHKGPSREEDAVR 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,024,991
Number of Sequences: 59808
Number of extensions: 507485
Number of successful extensions: 1532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)