Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021132
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    69   5e-12
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 36/93 (38%), Positives = 51/93 (54%)
 Frame = +2

Query: 485 PVTPHSSAYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 664
           P+     A+VI TS ++++   K+P+H ND+YF               G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEY 166

Query: 665 VPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGY 763
             SEQRK D KTVD  ++ AI   P+ K L GY
Sbjct: 167 TVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGY 199



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 351 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQ 506
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQ 119



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 91  NYDLGNGVMRFSKSKMFHKKAKYK 162
           N+DL  GV+RFS S++  KK + K
Sbjct: 13  NFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 282 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 416
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 594 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 728
           RSA +V+    +V+  + +  R + HLS+++PI  +S    S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408


>AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.3 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 480 SCPLRRIPQRM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 659
           + P  R P R  +    E  + T N +N     T+RR    S+V  NA +   S+P++++
Sbjct: 492 NAPATRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRR----SSVDKNAPKRNDSVPRERK 547

Query: 660 NTFHLSSAKP 689
           ++     +KP
Sbjct: 548 SSVSHDESKP 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,837
Number of Sequences: 27780
Number of extensions: 371610
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)