Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021132
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.78 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +3

Query: 477 NSCPLRRIPQRM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 656
           +S P   +   + S PPP F  +  +  + S ++++ R  +   +  +A   M  +P   
Sbjct: 365 SSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP--- 421

Query: 657 RNTFHLSSAKPIRRQSTRL*SKPSEPD---PTRRCSAD 761
            N  ++S   P+      + + P+ P    P RR  +D
Sbjct: 422 -NMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRISD 458


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 721 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 620
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 721 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 620
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 240 EWGNQTVPLKRRKSFYP 290
           EW    VP +R K +YP
Sbjct: 200 EWDILGVPAERHKKYYP 216


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 284 LPHSGENPCLIWWPSIQQACTQDPTQ 361
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 308 TDFLLSGVEGLPTFEGYCLVPPFFSPPICFTT 213
           T FL++  E LP  E   L+  ++   IC  T
Sbjct: 256 TVFLMTIRESLPPTEKTPLISLYYGVSICLVT 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,406
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)