Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021132
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    69   3e-12
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    69   3e-12
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    66   2e-11
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   2.0  
At2g27270.1 68415.m03277 expressed protein                             29   3.4  
At3g46920.1 68416.m05092 protein kinase family protein similar t...    28   6.0  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    28   6.0  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    28   7.9  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 37/82 (45%), Positives = 52/82 (63%)
 Frame = +3

Query: 261 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 440
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 441 SGLLLVTGPFAFNSCPLRRIPQ 506
           SGLLLVTGPF  N  PLRR+ Q
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQ 136



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 37/93 (39%), Positives = 49/93 (52%)
 Frame = +2

Query: 482 VPVTPHSSAYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 661
           VP+   + AYVIGTST++ +    L K F+D YF              EG+   A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184

Query: 662 YVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRG 760
               + +K DQK VD A+IKAI A P+ K   G
Sbjct: 185 KEIPQGKKDDQKAVDAALIKAIEAVPELKTYLG 217


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 37/82 (45%), Positives = 52/82 (63%)
 Frame = +3

Query: 261 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 440
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 441 SGLLLVTGPFAFNSCPLRRIPQ 506
           SGLLLVTGPF  N  PLRR+ Q
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQ 136



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 37/93 (39%), Positives = 49/93 (52%)
 Frame = +2

Query: 482 VPVTPHSSAYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 661
           VP+   + AYVIGTST++ +    L K F+D YF              EG+   A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184

Query: 662 YVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRG 760
               + +K DQK VD A+IKAI A P+ K   G
Sbjct: 185 KEIPQVKKDDQKAVDAALIKAIEAVPELKTYLG 217


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 36/82 (43%), Positives = 51/82 (62%)
 Frame = +3

Query: 261 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 440
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 441 SGLLLVTGPFAFNSCPLRRIPQ 506
           SGLLLVTGPF  N  PLRR+ Q
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQ 136



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 37/93 (39%), Positives = 51/93 (54%)
 Frame = +2

Query: 482 VPVTPHSSAYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 661
           VP+   + AYVIGTST+I +      K F+D YF              EG+   A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184

Query: 662 YVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRG 760
               +++K DQKTVD A+IK+I A P+ K+  G
Sbjct: 185 KEIPQEKKEDQKTVDAALIKSIEAVPELKVYLG 217


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 261 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 350
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 288 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 467
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 468 FAFNSCPLR-RIPQRM 512
           FAFN   ++ R+P+ M
Sbjct: 74  FAFNYIAIQPRVPRFM 89


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 422 TCWNSAQRSAFSYWTFCFQFVPVTPHSSAYVI 517
           T W S+  S  +Y +   + VP  P SSAYV+
Sbjct: 246 TTWTSSNFSPQTYHSNVSRLVPPDPRSSAYVV 277


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 546 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 725
           T   ++TS ++    + SASN +   +     + QKK N F ++ AK  + +  R  SKP
Sbjct: 40  TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94

Query: 726 SEPDPTR 746
             PDP R
Sbjct: 95  --PDPRR 99


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 644  ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKM 751
            ATK  K  P+  RK  ++TV    + AIG  P+KK+
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV 1388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,822,160
Number of Sequences: 28952
Number of extensions: 350822
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)