Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021130
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.8  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 560 FVFPLELLDKVVHHAIVKSSPPKWVSPAV 474
           F++ L LL     HAI  ++ P WV P V
Sbjct: 9   FIYSLALL---CLHAIFVNAAPDWVPPEV 34


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 560 FVFPLELLDKVVHHAIVKSSPPKWVSPAV 474
           F++ L LL     HAI  ++ P WV P V
Sbjct: 9   FIYSLALL---CLHAIFVNAAPDWVPPEV 34


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 738 FRSTMEPVGSLSVMPRWD 791
           FRST+  V +L+ M  WD
Sbjct: 350 FRSTLPVVSNLTAMNVWD 367


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 738 FRSTMEPVGSLSVMPRWD 791
           FRST+  V +L+ M  WD
Sbjct: 319 FRSTLPVVSNLTAMNVWD 336


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 738 FRSTMEPVGSLSVMPRWD 791
           FRST+  V +L+ M  WD
Sbjct: 370 FRSTLPVVSNLTAMNVWD 387


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 738 FRSTMEPVGSLSVMPRWD 791
           FRST+  V +L+ M  WD
Sbjct: 319 FRSTLPVVSNLTAMNVWD 336


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 502 HLPSGCRRRWISPRRYHP 449
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 271 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 363
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 777 MPRWDKGQIHDI 812
           +PRWD G+ H +
Sbjct: 184 IPRWDLGKFHRV 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,507
Number of Sequences: 438
Number of extensions: 5485
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)