Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021127
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.3  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.7  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 78  QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 224
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 604 PARSPAPGCPSADVRSPGPA 545
           PA  PAPG P  + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 79  NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSIT 258
           + S     +   S+  T SAT      S   A ++  +S+      NSTT A A S SI+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 630 LMLDDREHFQHEVQRQV-VLQQMFVHQDQQH 541
           L+LDDREH  H+ +  +  LQ     Q   H
Sbjct: 581 LLLDDREHLSHDERSYIQQLQSQIKSQSVHH 611


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = -1

Query: 324 LVLGDSPSIDTEPPGRNRPPAMSNRI*LRHSIGSRVLIRPSLGTCRLRRDRHRPAPDPVP 145
           L +   PS+D   P    PP+ SN         S     P+      +   +  AP P P
Sbjct: 45  LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104

Query: 144 ERRG 133
            + G
Sbjct: 105 PQGG 108


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
 Frame = +3

Query: 168  GGDLDAAYKYLDSAGSKLDY------RCYGEVIFDYSLLAAC 275
            GGDL   +  L   G  LDY      RCY E   D   L  C
Sbjct: 1378 GGDLTQLHSILSFFGFSLDYNFYSSGRCYAEFSIDSIQLKDC 1419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,080
Number of Sequences: 5004
Number of extensions: 57340
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)