Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021127
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    59   4e-09
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129...    36   0.040
03_05_0600 + 26021863-26022469,26022562-26022992                       30   1.5  
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764...    29   2.6  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    29   3.4  
06_01_0707 + 5136210-5136584                                           29   4.5  
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469...    29   4.5  
09_04_0258 - 16175258-16176069,16176111-16176414                       28   7.9  

>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 34/81 (41%), Positives = 46/81 (56%)
 Frame = +3

Query: 12  LHNLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 191
           L +L +S+ C     EKP L GQRIKTRKR+     DP  F DA+VQ      GDL+   
Sbjct: 57  LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113

Query: 192 KYLDSAGSKLDYRCYGEVIFD 254
           K ++S  S L++  YG+  F+
Sbjct: 114 KSIES--SDLNFSRYGDTFFE 132



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 389 KLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTA 508
           K +RR  +L K  E  M+K L  L+ F+  +R KLA  TA
Sbjct: 177 KTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTA 216


>07_01_0183 +
           1297445-1297796,1297896-1298424,1298548-1298630,
           1298901-1298989,1299091-1299164,1300196-1300246,
           1300439-1300515,1302199-1302863
          Length = 639

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 636 AALMLDDREHFQHEVQRQVVLQQMFVHQDQQHGCRHASVT 517
           A+  +D+  H  H  Q+Q   QQ   HQ QQHG    SVT
Sbjct: 28  ASSTMDEHHHVHHHQQQQQQQQQQQHHQQQQHGLFFPSVT 67


>03_05_0600 + 26021863-26022469,26022562-26022992
          Length = 345

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 306 PSIDTEPPGRNRPPAMSNR 250
           PS+D EPPG + PPA + R
Sbjct: 220 PSLDNEPPGGSTPPATTGR 238


>10_04_0020 +
           7644329-7644666,7644960-7645146,7645311-7645365,
           7645390-7645438,7645984-7646200
          Length = 281

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 525 MRAYIRAAGPGERTSAEGQPGAGLRAG 605
           +R  +R AG G+     GQPG G RAG
Sbjct: 123 LRGALRHAGSGKELGLWGQPGRGKRAG 149


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 105 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRCYGE-VIFD 254
           EK+K DP GF D  V     A G ++    +  S+G   DY  YGE V+FD
Sbjct: 62  EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107


>06_01_0707 + 5136210-5136584
          Length = 124

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 228 GSRVLIRPSLGTCRLRRDRHRPAP 157
           G RVL+ PS GT  LRR   RP P
Sbjct: 70  GGRVLLSPS-GTSSLRRSHRRPPP 92


>02_05_0425 -
           28845707-28846189,28846262-28846403,28846496-28846971,
           28848817-28848848,28849429-28849572,28849770-28849841,
           28850281-28850296
          Length = 454

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 412 LGKNVRRGNE--KGSGLLERLRSRTAHQ 489
           LG+  +RG E  +GSGLLERL +   H+
Sbjct: 23  LGRYTKRGKEDLRGSGLLERLGNACVHR 50


>09_04_0258 - 16175258-16176069,16176111-16176414
          Length = 371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 240 RHSIGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 127
           R   G+    +P  G  RLRR RH  A  P  +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,376
Number of Sequences: 37544
Number of extensions: 448973
Number of successful extensions: 1590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)