Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021127
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    83   3e-16
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  31   1.1  
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 30   2.0  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 30   2.0  
SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   3.5  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   4.6  
SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)                     29   4.6  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   8.1  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
 Frame = +2

Query: 281 PGGSVSMDGESP---KTNTCFFSAN*DMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 451
           PGGS+  DG +P   KTN C F AN D +T+R   Q+  KL+ RY+YL+K +E+EM K+L
Sbjct: 60  PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNKIL 119

Query: 452 VYLKGFDPEQRIKLARMT 505
           ++LKGF  E+R KLA  T
Sbjct: 120 LFLKGFTDEEREKLAFTT 137



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
 Frame = +3

Query: 105 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRCYGEVIFD 254
           EKEK+ P GFRDA++ GL      G DL+   K+LD++G KL+YR YGE +FD
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFD 54


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 470 RSLSSRPEPFSFPLRTFFPSTCT---DASVSRKPVRNFAW 360
           RS+S  P+P+ +P+ T +P   T     +VS+  VR + W
Sbjct: 177 RSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGWQW 216


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +1

Query: 82  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSIT 258
           G +  KE +K     TV  T  +     P AIS+QPT    +P  +         Y  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPTQTPKYRTT 98


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +1

Query: 82  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSIT 258
           G +  KE +K     TV  T  +     P AIS+QPT    +P  +         Y  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPTQTPKYRTT 98


>SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 642 GDAALMLDDREHFQHEVQRQVVLQQMFVHQDQQH 541
           G+ A+  ++ E F+HEV + ++ + M V  ++QH
Sbjct: 36  GETAIEAENEEDFEHEVLKFLLYRNMEVSPEEQH 69


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 654  RDERGDAALMLDDREHFQHEVQRQV-VLQQMFVHQDQQHGCRHASVTDPH 508
            RD+R        + EH   E+ RQ+ +LQQ     +Q H  +   VT  H
Sbjct: 1829 RDDRERLDRSSANFEHENQELHRQIQILQQQLAETEQSHARKLVEVTSRH 1878


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +3

Query: 75  GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 164
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 46  VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 168
           V R K +  RV     + + R+R   +     LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600


>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
          Length = 1002

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 531 AYIRAAGPGERTSAEGQPGAGLRAGSVRDHQ 623
           A  +AA  GE   AEG PG  LR G   ++Q
Sbjct: 33  ARAKAASFGEGDKAEGAPGGELRYGGAAEYQ 63


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 412 LGKNVRRGNEKGSGLLERLRSRTAHQAGAHDCMWIGNGCVPTSVLLVLVNEHLLKDNLAL 591
           +G+     +E+  G +ERL  R       H     G G + T+V L LVNE L K +++L
Sbjct: 1   MGRPAPHHDERLMGKMERLALRPPKCVELHVFSDAGQGAIGTAVYLRLVNE-LKKASVSL 59


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 201 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 58
           L  C + RDR+     P+   R   + HT++  +F W  S V  +I ++
Sbjct: 26  LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,915
Number of Sequences: 59808
Number of extensions: 471190
Number of successful extensions: 1460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)