Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021127
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.38 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 508 MWIGNGCVPTSVLLVLVNEH 567
           +W+G  C+    LL++ NEH
Sbjct: 165 VWLGAACISLPPLLIMGNEH 184



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 42  MSQKVEKPVLSGQRIKT 92
           M QK+EKPVLS     T
Sbjct: 314 MLQKLEKPVLSSSTTTT 330


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 242 SHIRLLIAGGLFLP 283
           SH+R L AGG  LP
Sbjct: 128 SHVRALAAGGNHLP 141


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +3

Query: 39  CMSQKVEKPVLSGQRIKTRKRDEKE 113
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +3

Query: 39  CMSQKVEKPVLSGQRIKTRKRDEKE 113
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +3

Query: 42   MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 173
            +  ++++P+   Q  +     ++E+Y     + AL Q     GG
Sbjct: 1640 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1683


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +3

Query: 42   MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 173
            +  ++++P+   Q  +     ++E+Y     + AL Q     GG
Sbjct: 1636 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1679


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 428 RTFFPSTCTDASVSRKPVRNFAWCPYPNW 342
           R   P+T T  S+      +    PYPNW
Sbjct: 87  RNGIPATLTYISLDTNRGGSPKLTPYPNW 115


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 273 CFCRAVRCRWTAN 311
           C+C   +C+ TAN
Sbjct: 2   CYCTCEKCKITAN 14


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 44  ESEGRKTSIIGSTD 85
           ESE R+ S +GST+
Sbjct: 371 ESENRRNSCLGSTE 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,136
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)