Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021124
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30)                28   8.4  
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         28   8.4  
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 383 CTWLVSIGL--YSSMLRPVHIENAIARLSMLTHDVFLND 273
           CTWL SIGL  YS + R   I+     LS +T +V L D
Sbjct: 332 CTWLESIGLAQYSEVFRNNAIDG--HELSNMTGNVLLTD 368


>SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30)
          Length = 619

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 638 TESWINLQLITDFIFCCNQCSCKSIPLFIVGEQVI*PAHIWKTTFHSAYFLF 483
           ++S+I L L  + +  C+   CK++   ++      PA++W+    SA +LF
Sbjct: 274 SDSFITLVLFQNDVIQCSD-ECKNLLRQVLHHSESLPAYLWQARHLSALYLF 324


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 383 CTWLVSIGL--YSSMLRPVHIENAIARLSMLTHDVFLND 273
           CTWL SIGL  YS + R   I+     LS +T +V L D
Sbjct: 614 CTWLESIGLAQYSEVFRNNAIDG--HELSNMTGNVLLTD 650


>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1027

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 362 GLYSSMLRPVHIENAIARLSMLTHDVFLNDDLTRLCV 252
           G  SS+LR  H E++ +R   L+ DVF   D   +CV
Sbjct: 476 GTDSSLLRENHREDSRSRKRCLSEDVFEGMDPYEICV 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,844,038
Number of Sequences: 59808
Number of extensions: 469338
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)