Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021124
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC075805-1|AAH75805.1|  960|Homo sapiens optic atrophy 1 (autoso...    44   5e-04
AB011139-1|BAA25493.1|  978|Homo sapiens KIAA0567 protein protein.     44   5e-04
BC039248-1|AAH39248.1|  928|Homo sapiens regulatory factor X dom...    32   2.3  
AL355272-1|CAI23444.2|  928|Homo sapiens Regulatory factor X dom...    32   2.3  

>BC075805-1|AAH75805.1|  960|Homo sapiens optic atrophy 1 (autosomal
           dominant) protein.
          Length = 960

 Score = 44.0 bits (99), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +1

Query: 349 LLYKPIDTSHVQKRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWK 507
           L + PI   +  +R +    AR    +LK+RYL+LG AVGGG T  K + +WK
Sbjct: 73  LKFSPIKYGYQPRRNFWP--ARLATRLLKLRYLILGSAVGGGYTAKKTFDQWK 123


>AB011139-1|BAA25493.1|  978|Homo sapiens KIAA0567 protein protein.
          Length = 978

 Score = 44.0 bits (99), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +1

Query: 349 LLYKPIDTSHVQKRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWK 507
           L + PI   +  +R +    AR    +LK+RYL+LG AVGGG T  K + +WK
Sbjct: 91  LKFSPIKYGYQPRRNFWP--ARLATRLLKLRYLILGSAVGGGYTAKKTFDQWK 141


>BC039248-1|AAH39248.1|  928|Homo sapiens regulatory factor X domain
           containing 1 protein.
          Length = 928

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 649 TPASRSRGSICN*SPILSF--AVISVVVNLSHCSLSGSRSFNQPISGRPPSTRHISYSTS 476
           +PA  SRGS+ N  P+     +V  V+   SHCS     ++ +PI    P   H  YSTS
Sbjct: 646 SPAMASRGSVINQGPMAGRPPSVGPVLSAPSHCS-----TYPEPIYPALPQANHDFYSTS 700

Query: 475 CLHQRHHRELSNEFSTL 425
             +Q   R   +  S L
Sbjct: 701 SNYQTVFRAQPHSTSGL 717


>AL355272-1|CAI23444.2|  928|Homo sapiens Regulatory factor X domain
           containing 1 protein.
          Length = 928

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 649 TPASRSRGSICN*SPILSF--AVISVVVNLSHCSLSGSRSFNQPISGRPPSTRHISYSTS 476
           +PA  SRGS+ N  P+     +V  V+   SHCS     ++ +PI    P   H  YSTS
Sbjct: 646 SPAMASRGSVINQGPMAGRPPSVGPVLSAPSHCS-----TYPEPIYPTLPQANHDFYSTS 700

Query: 475 CLHQRHHRELSNEFSTL 425
             +Q   R   +  S L
Sbjct: 701 SNYQTVFRAQPHSTSGL 717


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,678,359
Number of Sequences: 237096
Number of extensions: 2268660
Number of successful extensions: 7237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7223
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)