Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021124
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    38   0.009
Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    29   4.2  
Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 325 SIWTGRSMLLYKPIDTSHVQ-KRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAE 501
           ++++ +  LL K     ++Q +R +  + A A R +LK+RY +  G +GG +     Y E
Sbjct: 46  ALFSKKGGLLQKRQTVINLQSERAFIGIAASAARHLLKLRYFIATGVIGGSVAARTWYEE 105

Query: 502 WK 507
           WK
Sbjct: 106 WK 107


>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 YKPIDTSHVQKRCYGMLVARAIRGVL 432
           YK I T  V ++CY +L+ RAI   L
Sbjct: 61  YKAIKTRRVSRKCYALLMNRAIGDAL 86


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 YKPIDTSHVQKRCYGMLVARAIRGVL 432
           YK I T  V ++CY +L+ RAI   L
Sbjct: 61  YKAIKTRRVSRKCYALLMNRAIGDAL 86


>Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical
           protein F53F1.9 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  YIYINIFCYILQTSYVYYVITFSEPVKV 173
           Y Y NI C I  T   + ++ FS+P+ +
Sbjct: 273 YFYYNILCVIYSTVSAWTLLIFSKPINL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,758
Number of Sequences: 27780
Number of extensions: 362761
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)