Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021123
(797 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 196 4e-49
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 144 3e-33
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 142 9e-33
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 141 2e-32
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 138 1e-31
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 138 1e-31
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 136 6e-31
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 136 6e-31
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 135 1e-30
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 134 2e-30
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 134 2e-30
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 133 6e-30
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 132 7e-30
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 102 1e-20
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 48 2e-04
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 47 5e-04
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 47 6e-04
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 47 6e-04
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 45 0.002
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 45 0.002
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 44 0.003
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 44 0.004
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 44 0.004
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 43 0.010
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 42 0.014
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 42 0.018
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 41 0.041
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 40 0.055
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 40 0.072
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 40 0.072
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 39 0.17
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 38 0.22
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 38 0.22
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 38 0.29
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 38 0.39
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 38 0.39
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 37 0.51
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 37 0.51
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 37 0.51
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 37 0.51
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 37 0.51
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 36 0.89
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 36 1.2
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 36 1.6
UniRef50_UPI0000DBF4F0 Cluster: coiled-coil domain containing 15... 35 2.1
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 35 2.1
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 35 2.1
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 34 3.6
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 34 4.8
UniRef50_Q13MB8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3; ... 33 6.3
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 33 6.3
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 33 8.3
UniRef50_Q23YB5 Cluster: Protein kinase domain containing protei... 33 8.3
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 196 bits (479), Expect = 4e-49
Identities = 89/96 (92%), Positives = 90/96 (93%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR
Sbjct: 1392 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 1451
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PPNLFVYGGQTPYDLSRFASS LK + CNDYSA
Sbjct: 1452 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 1487
Score = 186 bits (452), Expect = 8e-46
Identities = 98/151 (64%), Positives = 106/151 (70%), Gaps = 6/151 (3%)
Frame = +2
Query: 2 FDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
FDIPSSLPTKVDISS EPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF
Sbjct: 1222 FDIPSSLPTKVDISSAEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 1281
Query: 182 PWVDLPYENGAQTLSVIAPKHDSKLTRLYFRPPLPKDSVSDPPSFL------TDFLLLTK 343
PWVDLPYENGAQTLSVIAPKHDSK + K + PSFL +D +L T
Sbjct: 1282 PWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAK-RLRFRPSFLPYRLSPSDEVLGTF 1340
Query: 344 SLAHFCFHLYVEPINDIPIIKFLFSPTFSLN 436
+ C P + +P LF +LN
Sbjct: 1341 LFSSLCRAYKRHPNHKVPFQPDLFVECINLN 1371
Score = 180 bits (438), Expect = 4e-44
Identities = 85/87 (97%), Positives = 85/87 (97%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE
Sbjct: 1307 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 1366
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CINLNEYSQLSNKTQAVIQANANR P
Sbjct: 1367 CINLNEYSQLSNKTQAVIQANANRSDP 1393
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 144 bits (348), Expect = 3e-33
Identities = 62/96 (64%), Positives = 80/96 (83%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLALMHDA+VL+ GP+KKYQRVFD++DR
Sbjct: 1463 DPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDARDR 1522
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +L+++ GQTP +S + + L ++ NDY+A
Sbjct: 1523 PAHLYIHAGQTPSSMSLWCQTHLTPAVKLA-NDYTA 1557
Score = 119 bits (287), Expect = 7e-26
Identities = 57/87 (65%), Positives = 66/87 (75%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL+ASI KRLRFRPS PYR+SP DE+LG L+ SLCRAY R P PF LFVE
Sbjct: 1378 DPTLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVE 1437
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI+LNE++QL++KTQAVI NA R P
Sbjct: 1438 CIDLNEFAQLTSKTQAVIMGNARRSDP 1464
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 FDIPSSLP-TKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQ 178
FD+PS P S P+ TA EPVYPG ++ + A + DP EI + + SNQ
Sbjct: 1292 FDLPSFRPQAPPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDPTDREIHWRRQLSNQ 1351
Query: 179 FPWVDLPYENGAQTLSVIAPKHDSK 253
FP VD Y AQ ++++AP HDSK
Sbjct: 1352 FPHVDKEYHLAAQPMTLLAPIHDSK 1376
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 142 bits (344), Expect = 9e-33
Identities = 62/96 (64%), Positives = 77/96 (80%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLALMHDA+VLI GP+KKYQRVFD +DR
Sbjct: 1601 DPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHDAVVLILGPVKKYQRVFDQRDR 1660
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +L+++ G TP +S + L ++ NDY+A
Sbjct: 1661 PRHLYIHAGNTPSQMSNWCQQHLTTAVKLA-NDYTA 1695
Score = 119 bits (286), Expect = 1e-25
Identities = 56/87 (64%), Positives = 63/87 (72%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL ASI KRLRFRPS PY+++P DE+LG LF LCRAY R P H F P LF E
Sbjct: 1516 DPTLLPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAE 1575
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CINLNE++QLS+KTQA I NA R P
Sbjct: 1576 CINLNEFAQLSSKTQATIMGNARRSDP 1602
Score = 66.5 bits (155), Expect = 7e-10
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 FDIPSSLPTKVDI-SSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQ 178
+DIPS++P S EPT EPVYPG ++ +AA + DP EI +G+ SNQ
Sbjct: 1430 WDIPSAIPESATRPDSTEPTTCHPEPVYPGETFENLAAHFLPAHDPTDREIYWQGQLSNQ 1489
Query: 179 FPWVDLPYENGAQTLSVIAPKHDSK 253
FP +D + AQ +S++A H K
Sbjct: 1490 FPHMDKEFHLAAQPMSLLAAIHQEK 1514
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 141 bits (342), Expect = 2e-32
Identities = 60/102 (58%), Positives = 82/102 (80%)
Frame = +3
Query: 492 SERKSLDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRV 671
+ R DPDWR++AVRIF+KTQHK+N+ SIFG WKACQTLALMHDA+VL+ GP+KKYQR+
Sbjct: 1489 ANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLALMHDAVVLLLGPVKKYQRI 1548
Query: 672 FDSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
FD+ DRP N+FVY G TP +++ + + LK + ++ NDY++
Sbjct: 1549 FDAADRPANIFVYAGHTPSEMANWCRANLKPGERVA-NDYTS 1589
Score = 104 bits (249), Expect = 3e-21
Identities = 49/85 (57%), Positives = 61/85 (71%)
Frame = +1
Query: 262 TLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECI 441
T L ASI KRLRFRPS PYR++ DE+LG+ LF + C A R P+ VPF +LF ECI
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECI 1471
Query: 442 NLNEYSQLSNKTQAVIQANANRWIP 516
LNE++QLS+KTQA+I AN +R P
Sbjct: 1472 ALNEFAQLSSKTQAIIMANRDRSDP 1496
Score = 33.9 bits (74), Expect = 4.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 FDIPSSLPTKVDISSVEPTDTA-IEPVYPGCDYKTVA 109
FD+ S++P S V+P D A I PVYPG ++ +A
Sbjct: 1374 FDVASAVPEPAKPSGVDPLDLASITPVYPGESFENLA 1410
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 138 bits (335), Expect = 1e-31
Identities = 58/96 (60%), Positives = 78/96 (81%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR++AVRIF+KTQHK+NEGS+FG WKACQTLALMHDA+VL+ GP+KKYQR FD +DR
Sbjct: 1422 DPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDR 1481
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P L+V+ G TP++++ + + L ++ NDY+A
Sbjct: 1482 PSTLYVHAGHTPFEMADWCRAHLTPAVKLA-NDYTA 1516
Score = 118 bits (285), Expect = 1e-25
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL ASI KRLRFR S PY ++P DE+LG+ L+ + CRAY R P PF PDL+ E
Sbjct: 1337 DPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAE 1396
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CINLNE++QLS+KTQA I ANANR P
Sbjct: 1397 CINLNEFAQLSSKTQATIMANANRSDP 1423
Score = 80.2 bits (189), Expect = 6e-14
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 FDIPSSLPTKVDIS-SVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQ 178
FDIPS+ D + + + AIEPVYPG ++++A+L + P D +S E +GE SNQ
Sbjct: 1251 FDIPSARHQVADHPLAPDHSACAIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQ 1310
Query: 179 FPWVDLPYENGAQTLSVIAPKHDSK 253
FP +D P+E GAQT S++AP H+SK
Sbjct: 1311 FPHLDKPFELGAQTSSLLAPLHNSK 1335
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 138 bits (334), Expect = 1e-31
Identities = 56/96 (58%), Positives = 73/96 (76%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR+T V+IF+K QHK+N+GSIFG WKACQTLALMHD ++L+ GP+KKYQR+FD+ DR
Sbjct: 1486 DPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIFDNADR 1545
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PPN++ + G+TP L + L H NDY+A
Sbjct: 1546 PPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTA 1581
Score = 119 bits (286), Expect = 1e-25
Identities = 57/87 (65%), Positives = 67/87 (77%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL ASI KRLRFRPS P++++ D VLG LF SLCRAY R PN VPF P+LF E
Sbjct: 1401 DPTLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAE 1460
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI+LNEY+QLS+KTQ+ I ANA+R P
Sbjct: 1461 CISLNEYAQLSSKTQSTIVANASRSDP 1487
Score = 81.8 bits (193), Expect = 2e-14
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 5/169 (2%)
Frame = +2
Query: 2 FDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
FD+P ++ +SV+P PVYPG + ++AA + DP + EI HK + SNQF
Sbjct: 1316 FDLPPAITPPPVSTSVDPPQAKASPVYPGEFFDSLAAFFLPAHDPSTREILHKDQSSNQF 1375
Query: 182 PWVDLPYENGAQTLSVI----APKHDSKLTRLYFRPPLPKDSVSDPPSFLTDFLLLTKSL 349
PW D P+ Q S+I AP HD L L P D ++L L
Sbjct: 1376 PWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINKRLRFRPSDSPHQITADDVVLGLQL 1435
Query: 350 AHFCFHLYV-EPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSK 493
H Y +P + +P LF+ SLN +S+ + T + +S+
Sbjct: 1436 FHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVANASR 1484
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 136 bits (329), Expect = 6e-31
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR+T VRIFSKTQHK+NE S+F WKACQTLALMHD ++L+ GP+KKYQR+ DS+DR
Sbjct: 1597 DPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLILVLGPVKKYQRILDSRDR 1656
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +L+++ GQTP+ LS + + L ++ NDY+A
Sbjct: 1657 PAHLYIHAGQTPHQLSEWCQNHLTPSVHLA-NDYTA 1691
Score = 96.7 bits (230), Expect = 6e-19
Identities = 50/87 (57%), Positives = 60/87 (68%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL AS+AKRLRFR S PY ++ D+ LG L+ SL RAY R P VPF P LF
Sbjct: 1513 DPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSP-EPVPFDPVLFAS 1571
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI N+++QL++KTQA IQANA R P
Sbjct: 1572 CIAENDFAQLTSKTQATIQANAFRSDP 1598
Score = 56.0 bits (129), Expect = 1e-06
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +2
Query: 5 DIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFP 184
++ +LP++ + S + E VYPG D + +A + DP LEI + +SNQFP
Sbjct: 1429 ELAPTLPSQPEPSPTYHSPATFETVYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFP 1488
Query: 185 WVDLPYENGAQTLSVIAPKHDSK 253
+++ P L+++AP H+ K
Sbjct: 1489 FINRPDTVACNPLTLVAPTHNQK 1511
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 136 bits (329), Expect = 6e-31
Identities = 56/96 (58%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR+T V+IF+K+QHK+N+GSIFGPWKACQTLALMHD ++L GP+KKYQR+FD +R
Sbjct: 1389 DPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLFDQLER 1448
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +++ + G TP+DL R+ S L+ + NDY+A
Sbjct: 1449 PSHIYYHAGNTPHDLRRWCSKHLE-TSHCTTNDYTA 1483
Score = 107 bits (256), Expect = 4e-22
Identities = 49/87 (56%), Positives = 65/87 (74%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
D TLL AS+ KRLRFRP+ PY+++PSD LG L+ S C+ Y+R PN ++PF LF+E
Sbjct: 1304 DSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLE 1363
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI +N+Y+QLS+KTQA I ANA+R P
Sbjct: 1364 CIAVNDYAQLSSKTQATIVANASRSDP 1390
Score = 60.5 bits (140), Expect = 5e-08
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Frame = +2
Query: 5 DIPSSLPTKVDIS-SVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
DI + P+ S EP + VYPG D+ T+AA + DP+ EI K + S QF
Sbjct: 1219 DINITAPSSSSFQPSDEPVPSDHTAVYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQF 1278
Query: 182 PWVDLPYENGAQTLSVIAPKH----DSKL------TRLYFRPPLPKDSVSDPPSFLTDFL 331
PW++L + QT S+I+ +H DS L RL FRP ++ SFL + L
Sbjct: 1279 PWLNLDFHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCL 1338
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 135 bits (326), Expect = 1e-30
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR TAVRIF+K QHK+N+ SIF WKACQTLALMH I+L+ GP+KKYQR+FDSKDR
Sbjct: 1482 DPDWRLTAVRIFAKAQHKVNDASIFSGWKACQTLALMHGYIILVLGPVKKYQRIFDSKDR 1541
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PP+++ + G+TP LS++ + L +++ NDY+A
Sbjct: 1542 PPHIYYHCGKTPSQLSQWCQTHLSGSSYIA-NDYTA 1576
Score = 115 bits (277), Expect = 1e-24
Identities = 55/87 (63%), Positives = 66/87 (75%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL SI KRLRFR S PY ++PSD++LG LFSSLC AY R+PN +PFQP+LF E
Sbjct: 1397 DPTLLPGSIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSE 1456
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI +N+Y+QLS+KTQA I AN R P
Sbjct: 1457 CICINDYAQLSSKTQATIVANHQRSDP 1483
Score = 57.6 bits (133), Expect = 3e-07
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Frame = +2
Query: 5 DIPSSLPTKVDISSVEPT-DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
D+ ++P+ SSV+ T I P G ++ +AA + DPD E+ + SNQF
Sbjct: 1312 DLLPTVPSSSSFSSVDHLFPTPISPAICGYTFENLAAFFLPAHDPDLKEVLINDQKSNQF 1371
Query: 182 PWVDLPYENGAQTLSVIAPKH----DSKLTRLYFRPPLPKDSVSDPPSFL-TDFLLLTKS 346
P++D P+E Q S++AP H D L + L + S P S +D LL
Sbjct: 1372 PYLDAPFELSCQPSSLLAPIHKPASDPTLLPGSIKKRLRFRASSSPYSITPSDQLLGQHL 1431
Query: 347 LAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPT 472
+ C P + +P LFS +N +S+ + T
Sbjct: 1432 FSSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQAT 1473
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 134 bits (325), Expect = 2e-30
Identities = 56/96 (58%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWRYT+V+IF+K+QHK+N+GSIFG WKACQTLALMHD ++L GP+KKYQR FD KD
Sbjct: 1385 DPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLALMHDYVILTLGPVKKYQRFFDQKDC 1444
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +++ + G+TP DLS + + L H ++ NDY++
Sbjct: 1445 PAHIYKHCGKTPADLSIWCKTNLSHQVYIE-NDYTS 1479
Score = 108 bits (260), Expect = 1e-22
Identities = 50/87 (57%), Positives = 61/87 (70%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
D TLL S+ KRLRFRPS PY +P+D +LG LF SLC Y RHP+ +PF P LF E
Sbjct: 1300 DSTLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAE 1359
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI +N+Y+QLS+KT+A I ANA R P
Sbjct: 1360 CICINDYAQLSSKTKATIVANAERSDP 1386
Score = 56.4 bits (130), Expect = 8e-07
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 6/162 (3%)
Frame = +2
Query: 5 DIPSSLPTKVDISSVEPT-DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
D+ S LP+ S + T P YP ++ +AA + DPD E+ ++ + S+QF
Sbjct: 1215 DLVSGLPSDPSTSLCDAIFGTPFTPAYPEETFENLAAFFLPAHDPDLKEMLYRDDASSQF 1274
Query: 182 PWVDLPYENGAQTLSVIA----PKHDSKLTRLYFRPPLPKDSVSDPPSFL-TDFLLLTKS 346
P++D P+ Q S+IA P DS L L L + P F DF+L
Sbjct: 1275 PYLDSPFLLSCQPSSLIAAIHKPATDSTLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHL 1334
Query: 347 LAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPT 472
C P IP LF+ +N +S+ + T
Sbjct: 1335 FQSLCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKAT 1376
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 134 bits (324), Expect = 2e-30
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWRYT VRIF+K+QHK+N+GSIFG WKACQTLALMHD ++L GP+KKYQR+ D DR
Sbjct: 1412 DPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDR 1471
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P ++ + G+TP +LS ++ S LK ++ CNDY++
Sbjct: 1472 PNFIYTHCGKTPSELSAWSHSFLKGDAYI-CNDYTS 1506
Score = 106 bits (254), Expect = 7e-22
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL SI+KRLRFR S PY +P+D +LG L+++ C+A+ R PN +PF P LF E
Sbjct: 1327 DPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAE 1386
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI LNEY+QLS+KTQA I +NA+R P
Sbjct: 1387 CICLNEYAQLSSKTQATIVSNASRSDP 1413
Score = 55.6 bits (128), Expect = 1e-06
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Frame = +2
Query: 2 FDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQF 181
FD+ S P+ V SS ++ + G ++ +AA + DPD E+ + S QF
Sbjct: 1242 FDLESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAHDPDLKEVTVGDQTSQQF 1301
Query: 182 PWVDLPYENGAQTLSVIAPKH----DSKLTRLYFRPPLPKDSVSDPPSFLTDFLLLTKSL 349
P++D PY Q S++A H D L L + S P +F + L+L L
Sbjct: 1302 PYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLL 1361
Query: 350 -AHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSK 493
++C P + IP LF+ LN +S+ + T + +S+
Sbjct: 1362 YTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASR 1410
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 133 bits (321), Expect = 6e-30
Identities = 58/96 (60%), Positives = 73/96 (76%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR TAV+IFSKTQHKINE SIFG WKACQTLALMHD +VL GP+K YQR+FDS++R
Sbjct: 1419 DPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYVVLFLGPVKIYQRIFDSQER 1478
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P N++ + G +P ++S +A L+ NDY+A
Sbjct: 1479 PANVYYHAGHSPLEMSEWAQKHLQS-GISHTNDYTA 1513
Score = 107 bits (258), Expect = 2e-22
Identities = 56/107 (52%), Positives = 67/107 (62%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL ASI KRL FRPS Y+LS D++LG L+ S CRAY RHP VPF LF E
Sbjct: 1334 DPTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAE 1393
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIPTGGTLLSAYFQKLSIKSTKA 576
CIN+NE++Q SNKT++ I ANA+R P F K K +A
Sbjct: 1394 CININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEA 1440
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 DIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFP 184
++ S++ + S T AI VYPG ++ +AA + DP+ EI H+GEFS QFP
Sbjct: 1249 NLASAVHSNCPAQSTHVTPAAITAVYPGESFENLAAHFLPAHDPEIKEILHRGEFSAQFP 1308
Query: 185 -WVDLPYENGAQTLSVIAPKHDSK 253
++ + AQ+ ++IA KHDSK
Sbjct: 1309 ILLNQDFSLSAQSSTLIAAKHDSK 1332
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 132 bits (320), Expect = 7e-30
Identities = 56/96 (58%), Positives = 76/96 (79%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDWR+TAV+IF+K+QHK+N+ SIFG WKACQTLALMHD ++L GP+KKYQR+FD+ DR
Sbjct: 1516 DPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDR 1575
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PP+L+ + G++P DLS + + L + NDY+A
Sbjct: 1576 PPHLYTHCGKSPADLSAWCQTHLTG-QIKLTNDYTA 1610
Score = 102 bits (245), Expect = 9e-21
Identities = 51/87 (58%), Positives = 62/87 (71%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
DPTLL SI KRLRFR S P+ LS D +LG LF +LC+AY+R+P H PF P LF E
Sbjct: 1431 DPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAE 1490
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIP 516
CI LN+Y+QLS+KTQA + AN +R P
Sbjct: 1491 CIALNDYAQLSSKTQATLVANHSRSDP 1517
Score = 62.9 bits (146), Expect = 9e-09
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Frame = +2
Query: 20 LPTKVDISSVEPTD-----TAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFP 184
LP ++ + +PTD T PVYPG +++ +AA + DP+ E+ + + S QFP
Sbjct: 1348 LPAQLS-QTTKPTDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFP 1406
Query: 185 WVDLPYENGAQTLSVIAPKHDSKL--TRLYFR-PPLPKDSVSDPPSFLT--DFLLLTKSL 349
W D P+ Q S+IA KH T L F P + SD P L+ D LL +
Sbjct: 1407 WFDRPFSLSCQPSSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLF 1466
Query: 350 AHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPT 472
+ C P + P LF+ +LN +S+ + T
Sbjct: 1467 FNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQAT 1507
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 102 bits (244), Expect = 1e-20
Identities = 42/81 (51%), Positives = 59/81 (72%)
Frame = +3
Query: 555 QHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDL 734
QHK+NE SIF WKACQTLAL HDA++L+ GP+KKYQR FD+K RP ++ + TP++L
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFEL 60
Query: 735 SRFASSQLKHYKFMSCNDYSA 797
S + + +K ++ NDY+A
Sbjct: 61 STWCQAHMKTQHHLT-NDYTA 80
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
PD+ A+ +F K+Q + P KA QT+A V+++G + +Y R +
Sbjct: 1253 PDFDPKAISLFLKSQWVKKVEKLGQPRIKAGQTIASFQQEAVMLYGTMARYMRRVREVFQ 1312
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P N+F+ +TP D+ R+A + NDY+A
Sbjct: 1313 PANIFINCERTPEDMDRWAREHWNFNRLSYANDYTA 1348
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 47.2 bits (107), Expect = 5e-04
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQ--HKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSK 683
PD+ + +F K+Q K+ + G+I K QT+A H A V++FG + +Y R
Sbjct: 1235 PDYDPNVISLFLKSQWVKKMEKLGAI--KIKPGQTIASFHQATVMLFGTMARYMRRMREV 1292
Query: 684 DRPPNLFVYGGQTPYDLSRFASSQLKHYKFMS---CNDYSA 797
+P ++ + TP DLS +A+ + H+KF ND++A
Sbjct: 1293 FQPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTA 1333
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 46.8 bits (106), Expect = 6e-04
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 501 KSLDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFD 677
K PD+ A+ +F K+Q + P K QT+A H V+++G + +Y R
Sbjct: 1183 KRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIR 1242
Query: 678 SKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+ P ++ + +TP +S F +Q F ND++A
Sbjct: 1243 DRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTA 1282
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 46.8 bits (106), Expect = 6e-04
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPD+ +++F K+Q + K QT+A A V+++G + +Y R +
Sbjct: 1018 DPDFPINEIKLFLKSQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQ 1077
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P N+F+ +TP DL +A + ND++A
Sbjct: 1078 PSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTA 1113
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +3
Query: 495 ERKSLDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRV 671
ER+ PD+ + IF K+Q + P K QT+A A V+++G + +Y R
Sbjct: 1049 ERRQ-SPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRR 1107
Query: 672 FDSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+ P N+ + +TP DLSR+ + K ND++A
Sbjct: 1108 YRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTA 1149
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
PD+ + +F K+Q + P K QT+A + V++FG + +Y R F +
Sbjct: 1150 PDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQ 1209
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +F+ TP D+S +A + + NDY+A
Sbjct: 1210 PKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTA 1245
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 44.4 bits (100), Expect = 0.003
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +3
Query: 492 SERKSLDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRV 671
SER D DW+ V +F K+Q+ EG +F KA QTLA ++ FGP+ +
Sbjct: 1267 SERS--DIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIES 1324
Query: 672 FDSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSC-NDYSA 797
+ + +++ G+ + L F + + + S +DY+A
Sbjct: 1325 AFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTA 1367
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQ--HKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSK 683
PD+ + +F K+Q KI + G+I P K QT+A V+++G + +Y R +
Sbjct: 1079 PDFPANKIALFLKSQWVKKIEKIGAI--PVKPGQTIASFMQETVMLYGTMARYLRKMRQR 1136
Query: 684 DRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+P ++F+ +TP D ++F + + ND++A
Sbjct: 1137 YQPAHIFINCEKTPEDFNKFILEHWSYKQVAHTNDFTA 1174
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQHKINEGSIFGPWKAC--QTLALMHDAIVLIFGPIKKYQRVFDSKD 686
PD+ + +F K+Q + + G K QT+A V+++G + +Y R +
Sbjct: 1286 PDFPKNKIALFLKSQW-VKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRRF 1344
Query: 687 RPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+P N+F+ TP DL +F SQ + ND++A
Sbjct: 1345 QPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTA 1381
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 42.7 bits (96), Expect = 0.010
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DP W +++F K Q + A Q++A ++L +GP Y R D + R
Sbjct: 1582 DPSWSLNMIKLFIKGQTVKKLEKMGSDATAGQSIASFRAEVLLAWGP---YARYIDRRIR 1638
Query: 690 ---PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PP+++++ +T D +F ++ H + + DY+A
Sbjct: 1639 ALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTA 1677
Score = 35.5 bits (78), Expect = 1.6
Identities = 27/88 (30%), Positives = 39/88 (44%)
Frame = +1
Query: 256 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 435
D + + AKRLRF R + +V G+ LF + RA P + F L E
Sbjct: 1500 DKATANITYAKRLRFSQRAANERSIAATKVAGSELFEAFTRAI---PLPQETFNDSLLEE 1556
Query: 436 CINLNEYSQLSNKTQAVIQANANRWIPT 519
C N+ L++K A + NA R P+
Sbjct: 1557 CRTENDTVHLTSKPLATLINNAERSDPS 1584
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 42.3 bits (95), Expect = 0.014
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
PD+ A+ +F K+Q K E KA QT+A V+I+G + +Y R F ++
Sbjct: 985 PDFDSHAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYC 1044
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P +FV TP D + F + + ND++A
Sbjct: 1045 PRKIFVNCETTPADFNSFILDEWNFNRTCFSNDFTA 1080
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 41.9 bits (94), Expect = 0.018
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +3
Query: 495 ERKSLDPDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRV 671
ER+ PD+ + IF K+Q K E K QT+A V+++G + +Y R
Sbjct: 1073 ERRQ-SPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRR 1131
Query: 672 FDSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
F P N+ + +TP DLSR+ + K ND++A
Sbjct: 1132 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTA 1173
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 40.7 bits (91), Expect = 0.041
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDW IF K+Q + + KA QTLA H ++ P +Y K
Sbjct: 1726 DPDWEVEKALIFMKSQLCTKFDNRYRDAKAGQTLACFHHNVLCRLAPYVRYIEKKVFKAL 1785
Query: 690 PPNLFVYGGQTPYDL 734
P NL+++ G+ DL
Sbjct: 1786 PRNLYIHSGKNFDDL 1800
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 40.3 bits (90), Expect = 0.055
Identities = 23/95 (24%), Positives = 46/95 (48%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPD+ A+ +F+K+Q + +KA QT++ +VL+ + Y R + +
Sbjct: 1245 DPDFPDNAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVLLTTTMALYLRKKREQHQ 1304
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYS 794
P N+F+ +TP + F ++ + +DY+
Sbjct: 1305 PDNVFIMCERTPDQFNNFVLTKWDFSRPNYTSDYT 1339
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 39.9 bits (89), Expect = 0.072
Identities = 27/94 (28%), Positives = 43/94 (45%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW IF K+Q + F KA QTLA A++ F P +Y + P
Sbjct: 1880 DWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHAVLCRFAPYMRYIEAKVFEVLPK 1939
Query: 696 NLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
NL+++ G+ DL+ + ++ K + +DY A
Sbjct: 1940 NLYIHSGKNIDDLAEWVTAH-KFNGVCTESDYEA 1972
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 39.9 bits (89), Expect = 0.072
Identities = 23/95 (24%), Positives = 46/95 (48%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPD+ A+ +F+K+Q + +KA QT++ +VL+ + Y R + +
Sbjct: 1327 DPDFPDNAIALFNKSQWVKKLEKVGARFKAGQTISAFKQEVVLLTTTMALYLRKKREQHQ 1386
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYS 794
P N+F+ +TP + F ++ + +DY+
Sbjct: 1387 PDNVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYT 1421
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 38.7 bits (86), Expect = 0.17
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQ--HKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKD 686
PD+ A+ +F K+Q K+ + K QT+A V+++G + +Y R +
Sbjct: 1205 PDFHPDAISLFLKSQWVKKVEKLGCLHV-KPGQTIASFMQETVMVYGTMSRYMRRIRQQH 1263
Query: 687 RPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+P +F+ + P D+++F + ND++A
Sbjct: 1264 QPAEIFINCEKNPEDMTQFIKQGWNFKRQAYSNDFTA 1300
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 38.3 bits (85), Expect = 0.22
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW +F K+Q + F KA Q++ A++ F P +Y + ++ PP
Sbjct: 1691 DWLADVGLVFMKSQLCTKWDNRFRNAKAAQSIVCFQHAVLCRFAPYMRYIEMKLNEVLPP 1750
Query: 696 NLFVYGGQTPYDLSRFASSQLKHYKFMS-C--NDYSA 797
N +++ G++ +L + +K YKF C +DY A
Sbjct: 1751 NFYIHSGKSLEELDAW----VKRYKFSGVCTESDYEA 1783
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 38.3 bits (85), Expect = 0.22
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW+ +F K+Q+ + F KA QT+ H ++ F P +Y + ++ P
Sbjct: 1788 DWKIDTGLVFMKSQNCTKFENRFRDAKAAQTIVCFHHIVLARFAPFIRYIEMKVNEALPK 1847
Query: 696 NLFVYGGQTPYDLSRF 743
N +++ G++ +L+ +
Sbjct: 1848 NYYIHSGKSLDELNNW 1863
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 37.9 bits (84), Expect = 0.29
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +3
Query: 501 KSLDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDS 680
K DPD+ A+ +F+K+Q + +KA QT++ + VL+ + Y R
Sbjct: 1167 KRQDPDFPENAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKRE 1226
Query: 681 KDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYS 794
+P N+F+ +TP + F ++ + +DY+
Sbjct: 1227 GHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYTSDYT 1264
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 37.5 bits (83), Expect = 0.39
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
PD+ + +F K Q + P KA QT+A V+++G + +Y R +
Sbjct: 75 PDFDPKTIALFLKAQWVKKVEKLGQPRIKAGQTIASFQQEAVMLYGTMARYMRRVREVFQ 134
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P ++ + TP LS++A + NDY+A
Sbjct: 135 PKDIMINCETTPEALSQWALENWNFNRTSYANDYTA 170
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 37.5 bits (83), Expect = 0.39
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
PD+ + +F K+Q K NE KA QT+A + + V+IFG + +Y R K
Sbjct: 1050 PDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVREKFC 1109
Query: 690 PPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
P N+ + S++ + K + ND+ A
Sbjct: 1110 PKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEA 1145
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 37.1 bits (82), Expect = 0.51
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
+W+ IF K+Q F KA QTLA ++ F P +Y +++ P
Sbjct: 1460 EWKIDEAMIFMKSQLCTKFEKRFVEAKAGQTLACFSHIVLCRFAPYVRYMEKIVNENLPK 1519
Query: 696 NLFVYGGQTPYDLSRF 743
N +++ G+ DL+ +
Sbjct: 1520 NFYIHNGKNFDDLNDY 1535
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 37.1 bits (82), Expect = 0.51
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPDW ++IF K Q KA QT+A +++ FGPI + +
Sbjct: 1384 DPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELL 1443
Query: 690 PPNLFVYGGQTPYDLSRFASS 752
P N+ +Y + DL ++A +
Sbjct: 1444 PENVMIYSQKNYMDLDKWAKT 1464
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 37.1 bits (82), Expect = 0.51
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW IF K+QH + KA QTLA A+++ F P +Y + P
Sbjct: 1861 DWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKP 1920
Query: 696 NLFVYGGQTPYDLSRFASSQ 755
N +++ G+ +L+ + ++
Sbjct: 1921 NFYIHSGKGLDELNEWVRTR 1940
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 37.1 bits (82), Expect = 0.51
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW +F K+QH + F KA Q++ A++ F P +Y + + P
Sbjct: 1672 DWLADVGLVFMKSQHCTKFDNRFRDAKAAQSIVCFQHAVLCRFAPYMRYIEMKLQEVLPS 1731
Query: 696 NLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
N +V+ G+ +LS + K + +DY A
Sbjct: 1732 NFYVHSGKGLDELSEWVKKG-KFEGICTESDYEA 1764
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 37.1 bits (82), Expect = 0.51
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 498 RKSLDPDWRYTAVRIFSKTQHKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVF 674
R+S D DW + + S+ KI++ G I A QT+A + V++FG + +Y R
Sbjct: 1013 RQSPDFDWNKLQIFLKSQWVKKIDKIGKI--DVNAGQTIAAFYQPTVMLFGTMARYMRRI 1070
Query: 675 DSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+P + + + +S++ S H ND++A
Sbjct: 1071 RDTYQPGEILINCEKNQKHISKWVESNWNHRLPAYTNDFTA 1111
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 36.3 bits (80), Expect = 0.89
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW + +F K+Q + +F KA QTLA I+ F P+ +Y ++ P
Sbjct: 1334 DWPTNEIFLFIKSQLCTKKEKMFCDAKAGQTLACFSHLILCKFAPLNRYIEKKVTQSLPG 1393
Query: 696 NLFVYGGQTPYDLSRFASS 752
N +++ + +L R+ S
Sbjct: 1394 NFYIHQKKNFDELERWVKS 1412
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 35.9 bits (79), Expect = 1.2
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW +IFSK+Q + F KA Q++ A++ F P +Y + + P
Sbjct: 1666 DWPTDVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMKVHEVLPK 1725
Query: 696 NLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
N +++ G+ +L + K + + +DY A
Sbjct: 1726 NYYIHSGKGLEELDAWVKKG-KFDRICTESDYEA 1758
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW +IFSK+Q + F KA Q++ A++ F P +Y + + P
Sbjct: 1664 DWPIEVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMKVQEVLPR 1723
Query: 696 NLFVYGGQ 719
N +++ G+
Sbjct: 1724 NFYIHSGK 1731
>UniRef50_UPI0000DBF4F0 Cluster: coiled-coil domain containing 15;
n=2; Eutheria|Rep: coiled-coil domain containing 15 -
Rattus norvegicus
Length = 715
Score = 35.1 bits (77), Expect = 2.1
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 IPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALM-MEPRDPDSLEIRHKGEFSNQFP 184
+P S +D+ +VEP + IEP PG + T AA M + +PD ++ + + + +
Sbjct: 295 LPESQSDVIDVQAVEPKASRIEPKEPGGEPDTQAAGMEFQTTEPDGQAVKTEIQDTLKVQ 354
Query: 185 WVDLPYENGAQTLSVIAPKHDSKLTR 262
V+L + + + P H + L+R
Sbjct: 355 TVELDGDTELEAQDSL-PSHQAFLSR 379
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 35.1 bits (77), Expect = 2.1
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQHKINEGSIFG-PWKACQTLALMHDAIVLIFGPIKKY-QRVFDSKD 686
PD+ + F KTQ + + +G P KA QT+ V+ G + +Y +R+FD
Sbjct: 1283 PDFDKFKIADFLKTQW-VRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLC 1341
Query: 687 RPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
PN++++ +T D S + + + ND A
Sbjct: 1342 TNPNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEA 1378
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep:
Replicase - White ash mosaic virus
Length = 954
Score = 35.1 bits (77), Expect = 2.1
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
DPD+ + +F+K+Q + +KA QT++ +VL+F + Y R K +
Sbjct: 825 DPDFPDNFIALFNKSQWVKKLDKVGAKFKAGQTISSFKQEVVLLFITMALYLRKQRVKHQ 884
Query: 690 PPNLFVYGGQTPYDLSRF 743
P +F+ + P + F
Sbjct: 885 PDYVFIMCEENPSAFNEF 902
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 34.3 bits (75), Expect = 3.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 516 DWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 695
DW +IFSK+QH + F KA Q++ ++ F P +Y + P
Sbjct: 1669 DWLIDTAQIFSKSQHCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHQALPD 1728
Query: 696 NLFVYGGQ 719
+++ G+
Sbjct: 1729 KFYIHSGK 1736
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 33.9 bits (74), Expect = 4.8
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 519 WRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPN 698
W IF K+Q S+F KA QTLA H ++ F P +Y P N
Sbjct: 1634 WPIDIADIFMKSQLCTKMESMFCEAKAGQTLACFHHVVLARFSPWVRYIEKKLVSSLPDN 1693
Query: 699 LFVYGGQ 719
+++ G+
Sbjct: 1694 YYIHSGK 1700
>UniRef50_Q13MB8 Cluster: Putative uncharacterized protein; n=1;
Burkholderia xenovorans LB400|Rep: Putative
uncharacterized protein - Burkholderia xenovorans
(strain LB400)
Length = 172
Score = 33.5 bits (73), Expect = 6.3
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +2
Query: 230 IAPKHDSKLTRLYFRPPLPKDSVSDPPSFLTDFLLLT 340
+AP H K T RP LP+ V PPSF DF+L T
Sbjct: 75 VAPPHPRK-THWLPRPRLPRFCVCRPPSFSPDFILQT 110
>UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1314
Score = 33.5 bits (73), Expect = 6.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 311 SFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSS 490
SF+TD L S+ FCF Y+ +ND II+ P + +++ M+ + L +SS
Sbjct: 89 SFMTDSLFTNTSMLVFCFIFYL--VNDFVIIRAFNKPEIAKSLNYIMTPNFHSVFLPISS 146
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 33.5 bits (73), Expect = 6.3
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 510 DPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
D DW + +F K+Q F KA QTLA I++ F P +Y + +
Sbjct: 1549 DSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANL 1608
Query: 690 PPNLFVYGGQTPYDLSRFA 746
P N +++ + +L FA
Sbjct: 1609 PDNYYIHQRKNFSELEDFA 1627
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 33.1 bits (72), Expect = 8.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 513 PDWRYTAVRIFSKTQ--HKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSK 683
PD+ + +F K+Q K+ + G+I K QT+A H + +Y R ++
Sbjct: 1246 PDFPANKIALFLKSQWVKKVEKLGAI--KVKPGQTIASFHARNGDVVRYDARYIRKMRAR 1303
Query: 684 DRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCNDYSA 797
+P N+F+ TP DL++F ++ + ND++A
Sbjct: 1304 FQPDNIFINCEATPEDLNKFVKTKWHFNRPAHTNDFTA 1341
>UniRef50_Q23YB5 Cluster: Protein kinase domain containing protein;
n=8; Oligohymenophorea|Rep: Protein kinase domain
containing protein - Tetrahymena thermophila SB210
Length = 551
Score = 33.1 bits (72), Expect = 8.3
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 304 PSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQA 483
P YR S D + +C+AY+ K+PF F+E INL +Y T+
Sbjct: 95 PDEYDYRYSSYDR--RDQILELICKAYQEFTGQKLPF---FFLEDINLEKYC----TTKG 145
Query: 484 VIQANANRWIPTGGTLLS-AYFQKL 555
+ N NR GG LL F KL
Sbjct: 146 DKKKNINRMPQEGGVLLDHEQFNKL 170
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,672,026
Number of Sequences: 1657284
Number of extensions: 20875724
Number of successful extensions: 56004
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55984
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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