Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021123
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    32   0.11 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    31   0.19 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    30   0.33 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.44 
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   3.1  
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   4.1  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   7.2  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    26   7.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   7.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   7.2  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.2  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   9.5  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 205 EWRPNPQRYSTQT*LEIDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 384
           +W  +P+R S     +ID  L S SIA      PS +   ++  D VL T+L+  L    
Sbjct: 283 KWEVDPERSSKNKWSDIDTVLASGSIAS---ISPSVI--AIAKQDIVL-TYLYPRLDVEV 336

Query: 385 KRHPNH--KVPF 414
            RH NH  K PF
Sbjct: 337 SRHLNHLLKSPF 348


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 119 MEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYFRPPLPKDSV 298
           M+P DP+  EI    +F+   P   +P ++G   L+ I      +    YFR  + K   
Sbjct: 1   MDPIDPELNEIL---DFTEYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEY 57

Query: 299 SDPPSFLTDFLLLTKSLAHFCFHLY 373
           S     LT FL++    AH+    Y
Sbjct: 58  SLRALNLTGFLIMNNP-AHYTVWAY 81


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 383 INDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKL 484
           IND+ ++K L  P F+LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
 Frame = +2

Query: 95  YKTVAALMMEPRDPDSLEIRHKGEFSNQF--PWVDLPYENGAQTLSVIAP--KHDSKLTR 262
           ++ VA+ + E   P  LEIR + EFS  F  P     + + A + +++ P     S +T 
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMFFEPKKSSSFVSRAASPAMVGPGVPFYSSITG 220

Query: 263 LYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVS 442
                  P  S+    +  +D +  +   +    +   +P N++PI   L S  F  +  
Sbjct: 221 ANGNVLAPSGSLKAVEN--SDVIESSAEDSSNTDNPSTKPSNEMPISPLLSSSVFFKDTE 278

Query: 443 ISM--STHSFPTRLKLSSKRTQ 502
           +S   S HS  +R   S KRT+
Sbjct: 279 MSTPNSNHS-RSRTPSSKKRTR 299


>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 53  PTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD 193
           PT T+  PVY G     ++A   +PR      +R + E  ++FP  D
Sbjct: 4   PTTTSYSPVYTGNPLYDISASQSDPRQRIRKNVRFQTEV-DEFPDFD 49


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 347 LAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSKR 496
           L  F +   +E +  +  I FL+ P    N  +++ +HS  + LKL+  R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 376  DIEMKTEMCQGLRQKEKVCKEGRRVGNGVFWQWRPKVK 263
            ++E +    QG  Q+ K  KEG  +   +  QWR  VK
Sbjct: 905  ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942


>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 125 PRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYFRPPLPKDSVSD 304
           P  P S+  RH+ E  +++P +   +   A   S I   HD +L     RP L  D  + 
Sbjct: 6   PSTPPSVNRRHEPEMLSEYPSLMFEHSYLASPSSPIDQVHD-ELKHSQKRPRLTNDEETI 64

Query: 305 P 307
           P
Sbjct: 65  P 65


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 123 NPGTPTPLKSATRGSSPINF 182
           +PGTPT LKS +   SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 101 TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDL 196
           T+A L++EPRD   L +  KG    Q PW  +
Sbjct: 264 TIATLVLEPRD---LIVYRKGFALLQIPWTSV 292


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 194 LPYENGA-QTLSVIAPKHDSKLTRLYFRPPLPKDSVSD 304
           +P   GA + +  + P  + KLT + FR P P  SV D
Sbjct: 207 IPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 VSDPPSFLTDFLLLTKSLAHFCFHL 370
           + D P+ L  F LL+K ++HF F L
Sbjct: 309 IVDQPANLLKFSLLSKKVSHFLFTL 333


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 194 LPYENGA-QTLSVIAPKHDSKLTRLYFRPPLPKDSVSD 304
           +P   GA + +  + P  + KLT + FR P P  SV D
Sbjct: 207 IPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 244 MFGCYNAEGLGAILIREI 191
           +FGC++A GLG  L  EI
Sbjct: 64  LFGCWSANGLGIALAYEI 81


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 322 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 429
           RL   D  +     S +C   +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,106
Number of Sequences: 5004
Number of extensions: 86485
Number of successful extensions: 376
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)