Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021123
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    30   1.9  
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    29   4.3  
01_06_0757 + 31737119-31737356,31738683-31738741,31738786-317389...    29   4.3  
03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763     28   7.5  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    28   7.5  
11_03_0105 + 10040421-10040891,10041375-10041499,10041884-10042748     28   9.9  
09_02_0411 + 8721855-8722232                                           28   9.9  

>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 355 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRWI 513
           F    + R Y R+  ++ PF PD+ V+ I+L + S L +   A I    +R I
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISRRI 243


>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
            21051775-21051828,21052077-21052184,21052653-21052802,
            21052914-21053258,21053361-21054801,21054844-21055675,
            21057060-21057325,21057530-21059603,21060172-21060442,
            21060556-21060990
          Length = 2059

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
 Frame = +1

Query: 154  PQGGVLQSISMGRSPL*EWRPNPQRYSTQT*LEIDPTL--LSASIAKRLRFRPSFLPYRL 327
            P G    S   GR  +    PN +++S        P+   L +SI  RL+F    LP  +
Sbjct: 1763 PSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVII 1822

Query: 328  SPSD--EVLGTFLFSSL-CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQAN 498
            + S+  + L + L S +  R      +   P+  D+ ++C + + + +L    QA++  +
Sbjct: 1823 ADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLQALLGNS 1882

Query: 499  ANRWIPT 519
               W+ T
Sbjct: 1883 QPSWLKT 1889


>01_06_0757 +
           31737119-31737356,31738683-31738741,31738786-31738940,
           31740311-31740386,31740521-31740655,31741273-31741309,
           31741817-31741839
          Length = 240

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 336 RRRKSVRKEGGSETESFGNGGRK*SRVNFESCLGAITLRVWA 211
           R+RK   ++GG      G  GR+ SRV+  +CL A+   V A
Sbjct: 65  RQRKREAEQGGGSERGLGLSGRR-SRVDLPACLPAMGYGVHA 105


>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
          Length = 249

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -1

Query: 173 WRTPPCGGFQGSRGPGVPSL--ELPQFCS 93
           W  PP GG+ G R P  P    E P  CS
Sbjct: 219 WAPPPAGGYYGGRSPYQPPYYDEEPAGCS 247


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 714 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 625
           L+ +TSWE + +C+ L   + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193


>11_03_0105 + 10040421-10040891,10041375-10041499,10041884-10042748
          Length = 486

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = +3

Query: 486 HPSERKSLDPDWRYTAVRIFSKT-------QHKINEGSIFGPWKACQTLALMHDAIVLIF 644
           +PSE K ++ D    A  +  KT       +  +  G+  GPW  C    +    IVL  
Sbjct: 173 NPSELKQINQDDDANAHEVLPKTDGFRCLEKAAVETGNDAGPWSLCSVTQVEETKIVLRM 232

Query: 645 GPI 653
            PI
Sbjct: 233 API 235


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 333 RRKSVRKEGGSETESFGNGGRK 268
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,887,207
Number of Sequences: 37544
Number of extensions: 612988
Number of successful extensions: 1621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)