Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021123
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_8238| Best HMM Match : p450 (HMM E-Value=0)                         30   2.5  
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)              29   5.8  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.8  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   7.6  
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 591 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 689
           W+      L  DAI  +   IKKYQR F+ KDR
Sbjct: 482 WRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDR 514


>SB_8238| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
 Frame = +2

Query: 329 LLLTKSLAHFCFHLYVEPIN------DIPII---KFLFSPTFSLNVSIS--MSTHSFPTR 475
           L++T  L H  FH Y EP N        P+I     L     SL+V  +    T+     
Sbjct: 8   LIVTLVLLHHLFHRYTEPSNLPPGPRPYPLIGNLPLLIGSFSSLHVKFTELAKTYGSVYT 67

Query: 476 LKLSSKRTQIVGSRLAVH 529
           L L+ +R+ +VGS  A+H
Sbjct: 68  LYLNGQRSVVVGSAKALH 85


>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 765 NVSVGTKQTERDRMEFGLHTQTSWED 688
           NV +    +ERDR++F +HT+T+  D
Sbjct: 30  NVDISDALSERDRVKFTVHTKTTLPD 55


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 382 RLDIEMKTEMCQGLRQKEKVCKEGRRVGNGVFWQ 281
           R D+E    +C  + ++EK+ +E  RV   VFWQ
Sbjct: 677 RCDLERLRNLCYMVGKREKMRRELFRVRERVFWQ 710


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 380  ARHRDENRNVPRTSSEGESL*GRKEGRKRSLLAMEAESKVGSISSH 243
            AR RDEN+ + R   +GE+       + R L++  AE + G IS H
Sbjct: 1070 ARLRDENQRLERQLKDGEAEYRVMSEKNRDLISKMAEYE-GKISKH 1114


>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 155 HKGEFSNQFPWVDLPYENGAQTLS---VIAPKHDSKLTRLY 268
           H G  + ++P+  +P  +G  T        P HD  LTR Y
Sbjct: 31  HDGTLTRRYPYTTVPLHDGTLTRRYPYTTVPLHDGTLTRRY 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,920,078
Number of Sequences: 59808
Number of extensions: 670806
Number of successful extensions: 1841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)