Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021123
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80028-6|AAQ01536.1| 365|Caenorhabditis elegans Serpentine rece... 29 2.9
AF067950-6|AAG24156.2| 372|Caenorhabditis elegans Serpentine re... 29 2.9
Z81088-7|CAB03129.2| 337|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z73906-8|CAA98120.3| 511|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical pr... 29 5.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 5.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 5.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 5.1
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 28 8.9
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 28 8.9
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U80028-6|AAQ01536.1| 365|Caenorhabditis elegans Serpentine
receptor, class w protein123 protein.
Length = 365
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 421 DLFVECINLNEYSQLSNKTQAVIQANANRWIPTGGTLLSAYFQKLSIKS-TKAQFSALGK 597
D+F EC++L+ Y + K + + +R T A+ + L I++ +++ ALGK
Sbjct: 98 DIFFECLSLDTYGLVLTKALLTVVKDYSRRCSTWLIFFIAFIRTLIIQNPLSSKYEALGK 157
>AF067950-6|AAG24156.2| 372|Caenorhabditis elegans Serpentine
receptor, class w protein122 protein.
Length = 372
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 421 DLFVECINLNEYSQLSNKTQAVIQANANRWIPTGGTLLSAYFQKLSIKS-TKAQFSALGK 597
D+F EC++L+ Y + K + + +R T A+ + L I++ +++ ALGK
Sbjct: 98 DIFFECLSLDTYGLVLTKALLTVVKDYSRRCSTWLIFFIAFIRTLIIQNPLSSKYEALGK 157
>Z81088-7|CAB03129.2| 337|Caenorhabditis elegans Hypothetical
protein F53F1.7 protein.
Length = 337
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 386 NDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSKRTQIVGSR 517
N + +++ LF +N ++ T+ F + K+ S+RT + GS+
Sbjct: 187 NFVAVLEILFVLAIVVNNLVTYITYRFKLKKKVLSRRTSVAGSK 230
>Z73906-8|CAA98120.3| 511|Caenorhabditis elegans Hypothetical
protein D2030.8 protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 630 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSQLKHYKFMSCN 785
++L FG K Y+R +D + + G PY+LSRF+ L++ M N
Sbjct: 387 VLLFFG--KFYER--SQQDASVHERAFAGSLPYELSRFSHKDLENISVMIKN 434
>Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical
protein F59A2.3 protein.
Length = 236
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 164 EFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYFRPPLPKDSVSDPPSFLTDFLL-LT 340
+ +N+ V L +NG++ + V+ + S F P +V+ P + F + +T
Sbjct: 73 QVTNKDAEVRLTKKNGSEDILVVFNVNHSVDMDEGFDDE-PSQAVAPVPVAMPPFTVEIT 131
Query: 341 KSLAHFCFHLYVEPINDIP 397
K CFHL + P++D P
Sbjct: 132 KGDQRLCFHLELVPVDDQP 150
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 20 LPTKVDISSVEPTDTAIEPVYP 85
LPT++D + PTD A PVYP
Sbjct: 2525 LPTEIDAAQSLPTDDAGMPVYP 2546
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 20 LPTKVDISSVEPTDTAIEPVYP 85
LPT++D + PTD A PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 20 LPTKVDISSVEPTDTAIEPVYP 85
LPT++D + PTD A PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical
protein F21H12.6 protein.
Length = 1374
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 401 IKFLFSPTFSLNVSISMSTHSFPTRLKLSSKRTQIVGSR 517
I+F +PT S++VS S+S S LK S + + +G R
Sbjct: 827 IRFQAAPTKSIDVSPSISLKSLVVSLKPQSAKVEPLGPR 865
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 301 GNGVFWQWRPKVKSGQFRVMFGCYNAEGLGAILIREIDPWKLIGE 167
GN Q P SGQF +G A+ G +++ + +IG+
Sbjct: 166 GNAPLLQRAPHQPSGQFGGGYGAQEAQAKGEVIVPRLSAGMIIGK 210
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 301 GNGVFWQWRPKVKSGQFRVMFGCYNAEGLGAILIREIDPWKLIGE 167
GN Q P SGQF +G A+ G +++ + +IG+
Sbjct: 213 GNAPLLQRAPHQPSGQFGGGYGAQEAQAKGEVIVPRLSAGMIIGK 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,119
Number of Sequences: 27780
Number of extensions: 491122
Number of successful extensions: 1314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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