Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021123
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.20 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.20 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    27   0.20 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.47 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 59  DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 226
           D  + P   G     V+ L++    PD   ++++ EF  Q  W D  L Y N +Q   L+
Sbjct: 75  DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134

Query: 227 VIAPKHDSKLTRLYF 271
            I    D  L   YF
Sbjct: 135 AIHHYDDIWLPDTYF 149


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 59  DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 226
           D  + P   G     V+ L++    PD   ++++ EF  Q  W D  L Y N +Q   L+
Sbjct: 75  DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134

Query: 227 VIAPKHDSKLTRLYF 271
            I    D  L   YF
Sbjct: 135 AIHHYDDIWLPDTYF 149


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 59  DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 226
           D  + P   G     V+ L++    PD   ++++ EF  Q  W D  L Y N +Q   L+
Sbjct: 75  DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134

Query: 227 VIAPKHDSKLTRLYF 271
            I    D  L   YF
Sbjct: 135 AIHHYDDIWLPDTYF 149


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 104 VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLSVIAPKHDSKLTRLYF 271
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q   L+ I    D  L   YF
Sbjct: 141 VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYF 200


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 528 TAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQ 665
           T++    K Q+     S+   W A   ++L++  +++IF P   Y+
Sbjct: 378 TSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNIYE 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,041
Number of Sequences: 438
Number of extensions: 6463
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)