Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021123
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 31 0.89
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 31 1.2
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ... 30 1.5
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ... 30 1.5
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ... 30 1.5
At5g08540.1 68418.m01016 expressed protein similar to unknown pr... 29 4.7
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 29 4.7
At4g12940.1 68417.m02023 expressed protein hypothetical protein ... 29 4.7
At1g51190.1 68414.m05758 ovule development protein, putative sim... 29 4.7
At2g35240.1 68415.m04323 plastid developmental protein DAG, puta... 28 6.2
At4g27010.1 68417.m03885 expressed protein ; expression support... 28 8.3
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 28 8.3
At2g27190.1 68415.m03268 iron(III)-zinc(II) purple acid phosphat... 28 8.3
At1g32580.1 68414.m04020 plastid developmental protein DAG, puta... 28 8.3
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS... 28 8.3
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 246 TRN*PDFTFGLHCQKTPFPTLLPSLQTFS 332
+RN PD T L +TPFP +P +++FS
Sbjct: 844 SRNKPDVTQNLPVSRTPFPARVPVVKSFS 872
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 707 VWRPNSIRSLSVCFVPTETLQ 769
VW P SIR+ S+ + P+ETLQ
Sbjct: 107 VWTPESIRTKSLTYYPSETLQ 127
>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 453
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 92 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYF 271
DY+ ++ E P + K + + FP +DL E G Q L +A HD +L
Sbjct: 170 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 227
Query: 272 RP 277
+P
Sbjct: 228 KP 229
>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 92 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYF 271
DY+ ++ E P + K + + FP +DL E G Q L +A HD +L
Sbjct: 184 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 241
Query: 272 RP 277
+P
Sbjct: 242 KP 243
>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 92 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKLTRLYF 271
DY+ ++ E P + K + + FP +DL E G Q L +A HD +L
Sbjct: 184 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 241
Query: 272 RP 277
+P
Sbjct: 242 KP 243
>At5g08540.1 68418.m01016 expressed protein similar to unknown
protein (pir||T27191)
Length = 346
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 355 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSN 471
F + R Y R+ ++ PF PDL + I+L + S L++
Sbjct: 186 FNMEEILRKYIRYALNEKPFNPDLVADLIHLRKASGLND 224
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 707 VWRPNSIRSLSVCFVPTETLQ 769
VW+P S R+LS+ + P+E L+
Sbjct: 105 VWKPESTRTLSMTYYPSEALK 125
>At4g12940.1 68417.m02023 expressed protein hypothetical protein -
Arabidopsis thaliana,PIR2:T08948; expression supported
by MPSS
Length = 151
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 265 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDL 426
L+ +SIAK+ +P + S+ +F F + ++R N K PF+PDL
Sbjct: 17 LIESSIAKQ---KPDLDHVNVDMSEIDYSSF-FKQMIEGWEREANEKYPFRPDL 66
>At1g51190.1 68414.m05758 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 568
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 172 GELPLVADFKGVGVPGFHH 116
GE+P VADF GV G HH
Sbjct: 61 GEVPKVADFLGVSKSGDHH 79
>At2g35240.1 68415.m04323 plastid developmental protein DAG,
putative similar to plastid protein [Arabidopsis
thaliana] gi|2246378|emb|CAB06698
Length = 232
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 14 SSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEP 127
S L + + S PT+ A P++PGCDY+ +M +P
Sbjct: 71 SPLKSGSNFSDRPPTEMA--PLFPGCDYEHWLIVMEKP 106
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 362 FHLYVEPINDIPIIKFLF 415
F+LY +PIN++P+ F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 11 PSSLPTKVDISSVEPTDTAIEPVYPGCD-YKTVAALMME 124
P +PT D++S P+ ++P YP + + +AA M++
Sbjct: 37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLD 75
>At2g27190.1 68415.m03268 iron(III)-zinc(II) purple acid phosphatase
(PAP12) identical to iron(III)-zinc(II) purple acid
phosphatase [precursor] SP:Q38924 from [Arabidopsis
thaliana]
Length = 469
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 316 EGRRVGNGVFWQWRPKVKSGQFRVMFGCYN 227
+G GNGV W VK G V + C N
Sbjct: 67 QGNHEGNGVIISWVTPVKPGSKTVQYWCEN 96
>At1g32580.1 68414.m04020 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 229
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 14 SSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEP 127
S L + + S PT+ A P++PGCDY+ +M +P
Sbjct: 68 SPLKSGSNFSDRAPTEMA--PLFPGCDYEHWLIVMDKP 103
>At1g31630.1 68414.m03884 MADS-box family protein similar to
MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
Length = 339
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 394 PNHKVPFQPDLFVECINLNEYSQL 465
PNH+ PFQ D F+E + Y Q+
Sbjct: 267 PNHQYPFQDDPFMEMLMEYPYEQV 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,732
Number of Sequences: 28952
Number of extensions: 477313
Number of successful extensions: 1332
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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