Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021122
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   107   1e-24
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   107   1e-24
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   6.2  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  107 bits (258), Expect = 1e-24
 Identities = 45/51 (88%), Positives = 47/51 (92%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
           TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 62  TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQ 256
           HQ
Sbjct: 60  HQ 61



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 33/93 (35%), Positives = 51/93 (54%)
 Frame = +3

Query: 441 LGGSVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKV 620
           +  +VAA+GVP+L+ ARGH IE+ P  P +     +   KTK+AV  L+ +KA+ D++KV
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKV 183

Query: 621 YKSQXXXXXXXXXXXXXXXXXXXPLIIFNKDQG 719
             S+                   PL++FN+D G
Sbjct: 184 ANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTG 216


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  107 bits (258), Expect = 1e-24
 Identities = 45/51 (88%), Positives = 47/51 (92%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
           TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 62  TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQ 256
           HQ
Sbjct: 60  HQ 61



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 33/93 (35%), Positives = 51/93 (54%)
 Frame = +3

Query: 441 LGGSVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKV 620
           +  +VAA+GVP+L+ ARGH IE+ P  P +     +   KTK+AV  L+ +KA+ D++KV
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKV 183

Query: 621 YKSQXXXXXXXXXXXXXXXXXXXPLIIFNKDQG 719
             S+                   PL++FN+D G
Sbjct: 184 ANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAG 216


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 209  KNSRQPYCVSKEAGHQPVLNHGVLDVLSP 295
            ++  +PY ++ +  + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 372 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH 497
           +  PH  L + AP  QP   E     +V     P+    +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 89  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 12
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,018
Number of Sequences: 5004
Number of extensions: 50901
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)