Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021122
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 117 8e-27
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 35 0.076
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 34 0.10
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 32 0.41
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 32 0.54
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.71
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 3.8
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.6
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.6
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 8.8
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 8.8
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.8
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 8.8
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 117 bits (282), Expect = 8e-27
Identities = 59/105 (56%), Positives = 67/105 (63%)
Frame = +1
Query: 94 VGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGWSPTSAESW 273
+ VF E + AG + P V P S + + + + G TSAESW
Sbjct: 6 ITVFNENGESAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ-TSAESW 64
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 54.8 bits (126), Expect = 7e-08
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +3
Query: 450 SVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKVYKS 629
++AA+ +PAL+ ARGH IEK P + + + KT AV L+ + A+ D+ K S
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDS 183
Query: 630 QXXXXXXXXXXXXXXXXXXXPLIIFNKDQG 719
+ PLII+N DQG
Sbjct: 184 KKIRAGKGKMRNRRTVMRKGPLIIYNNDQG 213
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 34.7 bits (76), Expect = 0.076
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 402
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +1
Query: 241 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 402
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHW 257
HH CY H Y Y+ H H + R H YP +H+
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHY 53
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 253 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
PT +E +G ++ R PR RGGG G G G RGGR
Sbjct: 982 PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 260
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 31.5 bits (68), Expect = 0.71
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 260
Y +HP T+ YHH H + ++ Q+P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 376 TYVHHDTCYRRHPDRTYEYHHHGHA 302
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -1
Query: 379 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 275
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 331 TYEYHHHGHAEFGRQHVQYPMI-QHWLVTSLLAHAVGLP-RVLGHRNVN 191
+Y++HHHG E Q V I + W+ L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 367 HHDTCYRRHPDRTYEYHHH 311
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 147 GRGLAAPCTVSLFSEYTDTKGRATDRLI 64
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 373 YVHHDTCYRRHPDRTYEYHHHGH 305
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 146 PFVFKAPIRPDLVNDVHVSMSKNSRQ--PYCVSKEAGHQPVLNHGV 277
PF F P+R +L+N++H+ ++ ++ + P+ G Q V N GV
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGV 1307
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 367 HHDTCYRRHPDRTYEYHHH 311
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 367 HHDTCYRRHPDRTYEYHHHGH 305
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 253 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
PT + S +G ++ R PR RGGG G G G RGGR
Sbjct: 494 PTPSGS-SSGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGR 533
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -1
Query: 355 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 260
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 PGQ*CSRFYVQELEAALLREQG-GWSPTSAESWGTGRAVARIPRVRGGGT 324
P Q C + E+ +L G G P AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,789,369
Number of Sequences: 59808
Number of extensions: 426453
Number of successful extensions: 1330
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -