Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021122
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   107   1e-23
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    28   5.8  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    28   5.8  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      28   5.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/50 (92%), Positives = 47/50 (94%)
 Frame = +1

Query: 259 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 33/91 (36%), Positives = 52/91 (57%)
 Frame = +3

Query: 441 LGGSVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKV 620
           +  ++AA+G+PAL+QARGH+I++    P +   K +   KTK+AV+FLRR   W+DI KV
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKV 182

Query: 621 YKSQXXXXXXXXXXXXXXXXXXXPLIIFNKD 713
           Y S+                   P++I+ +D
Sbjct: 183 YNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +2

Query: 80  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 372
           EA + +  G ++PTS+   G G         RGG    G  R G+G +G   RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 709


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 372
           EA + +  G ++PTS+   G G         RGG    G  R G+G +G   RGGR
Sbjct: 695 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 750


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 217 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 372
           EA + +  G ++PTS+   G G         RGG    G  R G+G +G   RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,992
Number of Sequences: 27780
Number of extensions: 310210
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)