Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021121
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    86   6e-18
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.68 
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   8.3  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 36/71 (50%), Positives = 53/71 (74%)
 Frame = +2

Query: 509 EFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFGAA 688
           E++IRDLND IN+LMREK  WEVQI+ LGG ++     K+ + +G+++     Y+Y+G A
Sbjct: 54  EYQIRDLNDAINRLMREKHEWEVQIRDLGGINYLYNKAKLFEDEGEQISDIDDYRYYGRA 113

Query: 689 KDLPGVRELFE 721
           ++LPGV+ELFE
Sbjct: 114 RELPGVKELFE 124


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 321 AEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKV 482
           A  A+TTL +  AAQ  +A    E++  L S C +L +A      +  E+A  +
Sbjct: 319 ASHALTTLNKAAAAQAAKAANNSEKQA-LDSACKELREAVLKNTSVPHELANSI 371


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -3

Query: 631 QHFRTDSSMIGAAQRFNLHL-----PMSLLPHKFINFVVKIANPELPRPA 497
           Q+ +  + ++  A R +L L     P +LL    I  V+  A PE+P PA
Sbjct: 207 QNCKLPNDLLNFADRHHLKLFFHSDPSALLSESEITSVIHKACPEIPNPA 256


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 293 KYNLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVP 406
           K+  N  +  R +    + L   +S    RPA +TSVP
Sbjct: 145 KHGKNSSKSSRAAQSAAAELISSSSITGARPANSTSVP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,738
Number of Sequences: 5004
Number of extensions: 62508
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)