Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021121
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0517 - 23599154-23600089                                         91   1e-18
06_01_0679 - 4972996-4973010,4973818-4973936,4974038-4974128,497...    34   0.100
10_06_0166 + 11392172-11392715,11392796-11392803                       31   1.2  
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139...    29   3.8  
08_01_1041 - 10555029-10555329,10558055-10558236                       29   3.8  
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587           29   5.0  
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970...    28   8.7  

>02_04_0517 - 23599154-23600089
          Length = 311

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 48/80 (60%), Positives = 56/80 (70%), Gaps = 8/80 (10%)
 Frame = +2

Query: 509 EFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARV--GPKMLDQDGKEV----PGNR-- 664
           E R+RDLNDEINKL+RE+ HWE +I  LGG DH+R    P M D DG  V    P  R  
Sbjct: 68  EHRLRDLNDEINKLLRERGHWERRIVELGGRDHSRSSNAPLMTDLDGNIVAIPNPSGRGP 127

Query: 665 GYKYFGAAKDLPGVRELFEQ 724
           GY+YFGAAK LPGVRELF++
Sbjct: 128 GYRYFGAAKKLPGVRELFDK 147



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3

Query: 309 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 488
           MARN EKA + L R+   + +E    RERRPYLASEC DL  AE+WR +I+REI  KVA+
Sbjct: 1   MARNEEKAQSMLNRFITMKQEEKRKPRERRPYLASECRDLADAERWRSEILREIGAKVAE 60

Query: 489 IQNAGLG 509
           IQN GLG
Sbjct: 61  IQNEGLG 67


>06_01_0679 -
           4972996-4973010,4973818-4973936,4974038-4974128,
           4974193-4974435
          Length = 155

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 318 NAEKAMTTLARWRAAQVQEAGGQRERRPYL 407
           N  + +TT AR R A+ QEAGG R RRP L
Sbjct: 22  NRTRGITTGARRRGARRQEAGGARRRRPAL 51


>10_06_0166 + 11392172-11392715,11392796-11392803
          Length = 183

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 511 LPRPAFCICATFFAISLTICNLHFSACGKSLHSDARYGRRSRWPPAS*TCAARQRASVVI 332
           +P P      +   + L +    FSA     H  A + RR   PPA+  C AR+R   ++
Sbjct: 1   MPHPNIAASCSPSCLLLAVAVTFFSATASISHGAAHHARRVPAPPAA--CVARER-DALL 57

Query: 331 AF 326
           AF
Sbjct: 58  AF 59


>09_06_0310 -
           22212348-22212695,22213561-22213766,22213796-22213905,
           22214351-22214427,22214466-22214486,22214518-22215651
          Length = 631

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 506 REFRIRDLNDEINKLMREKRHWEVQIKS 589
           +E ++RDL   +++L+REK H  V ++S
Sbjct: 306 KESKVRDLEARVDELLREKEHIGVLLRS 333


>08_01_1041 - 10555029-10555329,10558055-10558236
          Length = 160

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 713 ALARRVNPLQLQSICIPGCPALLSRPGPTF*DRLEHDRG 597
           A ARRV   +L +  + G  A ++ PGP+     E +RG
Sbjct: 13  AAARRVEAARLPATAVRGVEAAIAAPGPSLPHLAEGERG 51


>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
          Length = 191

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 342 LARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAK 476
           LARWR  +   + G+R RR  LA   +  P    W   +  ++ +
Sbjct: 36  LARWRWRRQGSSAGRRSRRVGLAERGSGAPARPVWLCAVAAKVGR 80


>01_06_1221 -
           35495427-35496542,35496650-35496839,35496988-35497061,
           35497407-35497573,35497685-35498018
          Length = 626

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 514 ELPRPAFCICATFFAISLTICNL-HFSACGK 425
           ELP+    I ATFF ++L +C +   +A GK
Sbjct: 493 ELPKYCLAISATFFVLALAVCAMREVAAHGK 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,685,642
Number of Sequences: 37544
Number of extensions: 410774
Number of successful extensions: 1245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)