Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021121
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                        141   5e-34
SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)            31   1.3  
SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)                     29   3.8  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   5.1  
SB_28873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_17901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               28   8.9  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            28   8.9  
SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)                      28   8.9  

>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score =  141 bits (342), Expect = 5e-34
 Identities = 61/72 (84%), Positives = 68/72 (94%)
 Frame = +2

Query: 509 EFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFGAA 688
           EFRIRDLNDEINKL+REKRHWE +IK LGGPD+ ++GPKMLD +GKEVPGNRGYKYFGAA
Sbjct: 122 EFRIRDLNDEINKLLREKRHWEDRIKELGGPDYGKIGPKMLDHEGKEVPGNRGYKYFGAA 181

Query: 689 KDLPGVRELFEQ 724
           K+LPGVRELFEQ
Sbjct: 182 KELPGVRELFEQ 193



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +3

Query: 369 QEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQIQNAGLG 509
           Q+     ERRP+LA+EC++L +AEKWR QI+RE+AKKVAQIQNAGLG
Sbjct: 75  QDRRKHSERRPFLATECDNLQEAEKWRHQIIREVAKKVAQIQNAGLG 121


>SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)
          Length = 625

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 455 DCQRNCEKSGTNTECRSREFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLD 634
           D + N  +SG NT C     R +D N   +    E++  E Q   L    H +V    + 
Sbjct: 336 DRKGNDARSGINTGCTFSPVRSKDKNVRSDG-QGEQKEEETQYSRLFSDTHRQVSKSFIL 394

Query: 635 QDGKEV 652
           ++GKE+
Sbjct: 395 ENGKEI 400


>SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)
          Length = 848

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 500 RSREFRIRDLNDEINKLMREKRHWEVQIKSLGGPDH 607
           +  + R R+L   IN+    K   E +IK LGGPD+
Sbjct: 330 KDAQLRTRNLKRYINQCTVAKAQCEKRIKLLGGPDY 365


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 572  EVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYK 673
            E+++ S+GGP+  ++   ++ Q   +V    G+K
Sbjct: 3471 EIKVPSMGGPEEKKISKALIGQGDNDVQAVEGWK 3504


>SB_28873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 299 NLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVPC 409
           N+N+G KR +  DNT T             + T VPC
Sbjct: 96  NMNNGNKRTKVLDNTQTRHTSGVGNMNNGNKRTKVPC 132


>SB_17901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 722 VRIA-LARRVNPLQLQSICIPGCPALLSRPGP 630
           +RI+ LA +  P+ + + C PG P +L RP P
Sbjct: 13  IRISVLALKSRPMLVSNSCSPGDPLVLERPPP 44


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 496  FCICATFFAISLTICNLHFSACGKSLHSDA 407
            FC CA     S++ C   F  CG++LH DA
Sbjct: 1015 FCGCAKTCKASIS-CQPKFKFCGETLHLDA 1043


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 272 DPKNRNCKYNLNHGQKRRESNDN 340
           D K ++C Y+ N G+ RRE+ D+
Sbjct: 137 DTKGKDCGYDRNRGKDRRENYDD 159


>SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)
          Length = 206

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 464 RNCEKSGTNTECRSREFRIRDLNDEI 541
           R CE+ GT   CR      R+L  EI
Sbjct: 42  RTCERCGTYRSCRDHHVTYRELGQEI 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,062,226
Number of Sequences: 59808
Number of extensions: 477447
Number of successful extensions: 2337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)