Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021121
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18790.1 68416.m02387 expressed protein 89 4e-18
At4g31340.1 68417.m04445 myosin heavy chain-related contains wea... 29 3.1
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 29 3.1
At1g09240.1 68414.m01031 nicotianamine synthase, putative simila... 29 4.1
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 5.5
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote... 28 5.5
At3g16990.1 68416.m02170 TENA/THI-4 family protein contains Pfam... 28 5.5
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 28 5.5
At1g63340.1 68414.m07160 flavin-containing monooxygenase-related... 28 5.5
At1g62580.1 68414.m07060 flavin-containing monooxygenase family ... 28 5.5
At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family pr... 28 7.2
At5g18730.1 68418.m02222 hypothetical protein predicted proteins... 28 7.2
At2g44640.1 68415.m05556 expressed protein 28 7.2
At4g09060.1 68417.m01493 expressed protein 27 9.6
At2g39580.1 68415.m04855 expressed protein 27 9.6
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr... 27 9.6
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ... 27 9.6
At1g50580.1 68414.m05679 glycosyltransferase family protein simi... 27 9.6
>At3g18790.1 68416.m02387 expressed protein
Length = 300
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 6/78 (7%)
Frame = +2
Query: 509 EFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEV----PGNR--GY 670
E R+RDLNDEINKL+RE+ HWE +I LGG ++++ KM D +G + P R GY
Sbjct: 68 EHRLRDLNDEINKLLRERYHWERRIVELGGHNYSKHSAKMTDLEGNIIDVPNPSGRGPGY 127
Query: 671 KYFGAAKDLPGVRELFEQ 724
+YFGAAK LPGVRELFE+
Sbjct: 128 RYFGAAKKLPGVRELFEK 145
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +3
Query: 309 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 488
MARN EKA + L R+ + E +ERRPYLASEC DL +A+KWR QI+REI KVA+
Sbjct: 1 MARNEEKAQSMLNRFITQKESEKKKPKERRPYLASECRDLAEADKWRQQILREIGSKVAE 60
Query: 489 IQNAGLG 509
IQN GLG
Sbjct: 61 IQNEGLG 67
>At4g31340.1 68417.m04445 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, nonmuscle type A
(Cellular myosin heavy chain, type A) (Nonmuscle myosin
heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo
sapiens]
Length = 437
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 461 QRNCEKSGTNTECRSREFRIRDLNDEINKLMREKRHWEVQIKSL 592
Q+N EK T E ++R+LN ++KL + + +I L
Sbjct: 130 QKNKEKDSTEARTNEAEKKLRELNSSLDKLQKTNEEQKNKIGKL 173
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 494 ECRSREFRIRDLNDEINKL-MREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNR 664
+CR+R F D+ EIN++ + K WE K G + + DQ EV N+
Sbjct: 527 KCRNRTFITSDIRKEINEMNQKVKEEWEK--KHSGEEKNKENDTEKEDQRSNEVKANK 582
>At1g09240.1 68414.m01031 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 530 NDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFGAAKD 694
+D IN ++ K+H V I ++GGP+ + P + ++ N + FGA ++
Sbjct: 263 DDVINSVVISKKHPVVSIGNVGGPNSCLLKPCNCSKTHAKMNKNMMIEEFGAREE 317
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 470 CEKSGTNTECRSREFRIRDLNDEINKLMREKRHWEVQ 580
C +CR ++ IRDL ++I K R+ E+Q
Sbjct: 900 CLARDKEADCREKDVLIRDLKEKIVKFSSYVRYMEIQ 936
>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
kinase, putative
Length = 935
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 417 CNDLPQAEKWRLQIVREI 470
C D P+A W L+IVRE+
Sbjct: 858 CQDNPEARPWMLEIVREL 875
>At3g16990.1 68416.m02170 TENA/THI-4 family protein contains Pfam
profile: PF03070 TENA/THI-4 family
Length = 221
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 464 RNCEKSGTNTECRSREFRIRDLNDEINKLMREKRHWEVQIKSL 592
R C+ SG +++ I LNDEI RE W+V ++
Sbjct: 64 RACKDSGESSDMEVVLGGIASLNDEIEWFKREGSKWDVDFSTV 106
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 524 DLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNR 664
+L DE+ + RE+RH+ + KS R G ++L +D K P R
Sbjct: 58 NLRDELEE--RERRHFSSKDKSYNDDRDRRRGSQLLLEDSKRDPEER 102
>At1g63340.1 68414.m07160 flavin-containing monooxygenase-related /
FMO-related low similarity to flavin-containing
monooxygenase 2 (FMO2) from Homo sapiens [SP|Q99518]
Length = 398
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 402 YLASECNDLPQAEKWRLQIVREIAKKV 482
+LA +C D P+ EKWR Q+ ++ K++
Sbjct: 331 WLADQC-DYPRIEKWREQMFYKVFKRI 356
>At1g62580.1 68414.m07060 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743
Flavin-binding monooxygenase-like domain
Length = 497
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 402 YLASECNDLPQAEKWRLQIVREIAKKV 482
+LA +C D P+ EKWR Q+ ++ K++
Sbjct: 430 WLADQC-DYPRIEKWREQMFYKVFKRI 455
>At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 209
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 272 DPKNRNCKYNLNHGQKRRESNDNTSTLACGTSSGSGR--PARTTSVPCI 412
D + R + + +RE D TS G+ SGS R PA PC+
Sbjct: 82 DTQTRIKDLSARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCV 130
>At5g18730.1 68418.m02222 hypothetical protein predicted proteins -
Arabidopsis thaliana
Length = 644
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -3
Query: 295 FTVSVFGIKTIQIS*NFILKWSCMVFEVDSHKKSDNSLIKYVTTEIDEIQLYL 137
F+VS +T + N+ +KWS E+DSH+K + ++ ++ DE +Y+
Sbjct: 275 FSVSPRKGETWALFKNWDIKWSS---ELDSHRKYEYEFVEILSDYADEAGVYV 324
>At2g44640.1 68415.m05556 expressed protein
Length = 451
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 381 GQRERRPYLASECNDLPQAEKWRLQIVREIAKKV 482
GQ + + A D+ AE+W LQ+V++ AK +
Sbjct: 97 GQFKPKKLFADIKADISNAEEWDLQVVKDTAKHI 130
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 485 TNTECRSREFRIRDLNDEINKLMREKRHWEVQI 583
++ R E R+R+L DEI ++ E + ++ QI
Sbjct: 135 SDERAREAEARVRELEDEIGRMSEEMQRFKRQI 167
>At2g39580.1 68415.m04855 expressed protein
Length = 1567
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +2
Query: 299 NLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVPCIRM**FATS*EVEVTDCQRNCEK 478
N NH R SN+N L C +SG +T+VP + + +T+ + + +K
Sbjct: 378 NGNHQVFSRSSNNNWKRLPCSNNSGLYNIPGSTTVPG-----HSQLDMLSLTNLEESLDK 432
Query: 479 SGTNTECRSREFRIRDLN 532
+ R R F I + N
Sbjct: 433 ELEEAQERKRLFEIEERN 450
>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -3
Query: 517 PELPRPAFCI----CATFFAISLTICNLHFSAC 431
PELP P +C+ C + + L IC +H C
Sbjct: 638 PELPPPTYCVSIFSCLSKPPVVLGICKIHQGIC 670
>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
(PIN1) identical to putative auxin efflux carrier
protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
contains Pfam profile PF03547: Auxin Efflux Carrier
Length = 622
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 441 KWRLQIVREIAKKVAQIQNAGLGSSGFAI 527
KW +++ IAK ++ + +AGLG + F++
Sbjct: 494 KWNIEMPALIAKSISILSDAGLGMAMFSL 522
>At1g50580.1 68414.m05679 glycosyltransferase family protein similar
to UDP rhamnose: anthocyanidin-3-glucoside
rhamnosyltransferase GB:CAA81057 GI:397567 from [Petunia
x hybrida]; contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 448
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 424 ICHKLRSGGYRLSEKLRKKWHKYRMPVSGVPDS 522
+ +KL G+R++ L KK HK P++ PDS
Sbjct: 24 LANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDS 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,692
Number of Sequences: 28952
Number of extensions: 328952
Number of successful extensions: 969
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -