Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021120
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    82   8e-17
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    26   5.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   5.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   7.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.5  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   9.9  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   9.9  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 82.2 bits (194), Expect = 8e-17
 Identities = 38/49 (77%), Positives = 40/49 (81%)
 Frame = +1

Query: 103 EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
           E+ EV IHQ IHTIEF LG VSHTASYLRLWALSLAH QL+ V WNM L
Sbjct: 685 ELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWNMTL 733



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 31/59 (52%), Positives = 41/59 (69%)
 Frame = +3

Query: 279 GGIFLYVVFAGWAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEI 455
           G IF+ ++F  W   +  +LV MEG SA LH+LRLHWVE  SK + GEGY F PF+F++
Sbjct: 744 GSIFVVILFGFWFIATCVVLVAMEGTSAMLHSLRLHWVEGMSKHFEGEGYAFTPFTFKV 802


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 285 IFLYVVFAGWAAISVSILVLMEGLSAFLHTL 377
           IFLYV+ AG A  S + LVL   L A  H+L
Sbjct: 9   IFLYVLIAGVATFSFAFLVL-NRLQAEEHSL 38


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 97  DEEITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQ-LAEVAWNM 243
           D+   EV I+  +  ++F+L SVS   S++R W+ +   A+ ++ + WN+
Sbjct: 300 DDSNEEVHIYLEV-IVDFLLSSVSDIDSFVR-WSAAKGLAKIISRLPWNL 347


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 770 NDIVRIYNNYSRHINTINSNKY 705
           N ++ I NN+S H N I  N Y
Sbjct: 483 NSVLSIGNNHSNHSNIIKPNTY 504


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 375 LRLHWVEFQSKFYGGEGYLFQPFSFEIILDSAGQ 476
           L+LHW +   K Y  +  +F    F ++  SAGQ
Sbjct: 844 LKLHWSKSAIKKYETKASIFNELLFCLVYISAGQ 877


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 375 LRLHWVEFQSKFYGGEGYLFQPFSFEIILDSAGQ 476
           L+LHW +   K Y  +  +F    F ++  SAGQ
Sbjct: 844 LKLHWSKSAIKKYETKASIFNELLFCLVYISAGQ 877


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 218 CACARESAHSRRYDAVCDTLPNTNS 144
           C C+ +++H  +Y A+C   P+T++
Sbjct: 23  CCCSPQTSHWCKYPALCLKSPDTHN 47


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 365 EGREPLHEHEDGDGDG 318
           EG E   E +DGDGDG
Sbjct: 195 EGDEEEEEEDDGDGDG 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,984
Number of Sequences: 5004
Number of extensions: 47723
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)