Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021120
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 83 2e-16
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 81 1e-15
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 79 6e-15
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203... 31 0.84
11_06_0574 + 25098231-25099970 31 1.1
11_06_0570 + 25055864-25057603 31 1.1
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 30 1.9
05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243... 30 2.6
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 29 3.4
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 3.4
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 29 5.9
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/56 (67%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
Frame = +1
Query: 85 SGHHDE-EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
S HH+E E +EVF+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V ++ +L
Sbjct: 693 SNHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVL 748
Score = 73.7 bits (173), Expect = 2e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +3
Query: 324 SVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEII 458
+V +L++ME LSAFLH LRLHWVEFQ+KFY G+GY F PFSF +I
Sbjct: 771 TVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFSFALI 815
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/54 (68%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Frame = +1
Query: 91 HHDE-EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
HH+E E +EVF+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V + +L
Sbjct: 658 HHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVL 711
Score = 72.1 bits (169), Expect = 5e-13
Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +3
Query: 285 IFLYVVFAG-WAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEIIL 461
IF+ ++ A + ++ +L++ME LSAFLH LRLHWVEFQ+KFY G+GY F PF+F I+
Sbjct: 720 IFILIIGAVIFLFATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASII 779
Query: 462 D 464
+
Sbjct: 780 E 780
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 78.6 bits (185), Expect = 6e-15
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +1
Query: 85 SGHHDEEITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
S H D +EVF+HQ IH+IEFVLG+VS+TASYLRLWALSLAH++L+ V + LL
Sbjct: 691 SRHDDFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKLL 745
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +3
Query: 333 ILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEIILD 464
IL+ ME LSAFLH LRLHWVEF +KFY G+GY F+PFSF ++ D
Sbjct: 771 ILLGMESLSAFLHALRLHWVEFMNKFYHGDGYKFRPFSFALLAD 814
>06_03_1277 +
28918140-28918279,28919552-28919761,28920179-28920374,
28920459-28920853,28921024-28921119,28921330-28921402,
28921650-28921935,28923824-28923946,28924123-28924404,
28924513-28924928
Length = 738
Score = 31.5 bits (68), Expect = 0.84
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 356 EPLHEHEDGDGDGRPAREHHVQEDPALVVVGHQTFLSSMFQATSASCACARESAHSRRY- 180
EP+ + G +G PA + ED + G + MFQ T S A S H RRY
Sbjct: 90 EPVVSYRGGV-EGFPATAIDLDEDMEITSCGGNMTILYMFQFTDFSEAVTSYSLHLRRYH 148
Query: 179 DAVCDTL 159
D + D+L
Sbjct: 149 DKLLDSL 155
>11_06_0574 + 25098231-25099970
Length = 579
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -2
Query: 338 EDGDGDGRPAREHHVQEDPALVVVGHQTFLSSMFQATSASCACARESAHSRR 183
+DGDGDG H + D A VVVGH ++ A C RR
Sbjct: 126 DDGDGDGAAMSGHGLDGDGA-VVVGHIRLVAEAMVAAGYGMECVTTFMSHRR 176
>11_06_0570 + 25055864-25057603
Length = 579
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -2
Query: 338 EDGDGDGRPAREHHVQEDPALVVVGHQTFLSSMFQATSASCACARESAHSRR 183
+DGDGDG H + D A VVVGH ++ A C RR
Sbjct: 126 DDGDGDGAAMSGHGLDGDGA-VVVGHIRLVAEAMVAAGYGMECVTTFMSHRR 176
>11_06_0562 + 25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 30.3 bits (65), Expect = 1.9
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 705 IFIRVDRVNVSRIIVIYSDNVIDSVNVLS 791
+ + +DR +SR++++ DN++ + V+S
Sbjct: 1164 LLVHIDRYRISRVVILRPDNIVHDLQVVS 1192
>05_01_0308 +
2434642-2434736,2435176-2435245,2435435-2435566,
2435659-2435722,2435786-2435855,2435952-2436036,
2437572-2437628,2437894-2438010,2438267-2438337,
2438703-2439045
Length = 367
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -1
Query: 507 LHMTKAFIIRPDPPSLE*SRTRKAGRGSL------LLRRTCSGTRPSADAAC 370
LH+ AF+ R +PP+ S RKAG GS+ + +C+G D C
Sbjct: 12 LHLKLAFLAR-EPPACVLSLARKAGGGSVTPHVQNFILESCTGNNAGGDQNC 62
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -2
Query: 299 HVQEDPALVVVGHQTFLSSMFQATSASCACARESAHSRRYDAVCDTLPNTNSMV 138
H+ P+LV+ S+F+ + C+ AR+S+ ++ D+VC LP T+ V
Sbjct: 242 HLDCSPSLVLENKIVSSDSLFKVPN-DCS-ARDSSRTQVADSVCHPLPETHLFV 293
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = -2
Query: 353 PLHEHEDGDGDGRPAREHHVQEDPALVVVGHQTFLSSMFQATSASCACARESAHSRRYDA 174
P H H D +P HH D H F + T +S A AR + R+ +
Sbjct: 296 PWHHHHASDAPCKPHHPHHGNGD-------HPLFFPNYMANTESSRAKARSQSAPRQRAS 348
Query: 173 VCDTLPNTNSMVW 135
V + +S+ W
Sbjct: 349 VSSSASEASSVRW 361
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 194 HSRRYDAVCDTLPNTNSMVWMAW*MKTSVISSS*CPEAGTGAPPAVPFSALPSTGW 27
H++R D C L +++ +V TSV+++S E + + + F+ PS+ W
Sbjct: 82 HNKRTDRACPFLHSSSIIVSKPEFDTTSVLATSVAMEVVSSSHSCLAFNRTPSSAW 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,042
Number of Sequences: 37544
Number of extensions: 316009
Number of successful extensions: 1134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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