Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021120
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    27   0.28 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   1.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.0  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 752 YNNYSRHINTINSNKYFIFNY 690
           YNNY+ + N  N   Y+  NY
Sbjct: 94  YNNYNNNYNNYNKKLYYNINY 114


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 779 NRINDIVRIYNNYSRHINTINSNKYFIFNY 690
           N  N+    YNNY+ + N      Y+  NY
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 749 NNYSRHINTINSNKY 705
           NNY+ + N  N+N Y
Sbjct: 332 NNYNNNYNNYNNNNY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,948
Number of Sequences: 438
Number of extensions: 3329
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)