Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021120
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...    82   5e-16
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila...    81   7e-16
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    81   7e-16
At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    29   5.0  
At5g35320.1 68418.m04186 expressed protein                             28   8.7  

>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/56 (66%), Positives = 48/56 (85%), Gaps = 2/56 (3%)
 Frame = +1

Query: 88  GHHDEEI--TEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
           GHH+EE   +E+F+HQ IH+IEFVLGSVS+TASYLRLWALSLAH++L+ V +  +L
Sbjct: 695 GHHEEEFNFSEIFVHQLIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVL 750



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = +3

Query: 258 LMSNDYQGGIFLYVVFAGWAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQ 437
           L++  Y+  +   +  A +A  +  IL++ME LSAFLH LRLHWVEF  KF+ G+GY F+
Sbjct: 751 LLAWGYENILIRLIGVAVFAFATAFILLMMETLSAFLHALRLHWVEFMGKFFNGDGYKFK 810

Query: 438 PFSFEII 458
           PFSF +I
Sbjct: 811 PFSFALI 817


>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 821

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 35/54 (64%), Positives = 46/54 (85%)
 Frame = +1

Query: 88  GHHDEEITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
           GH + E +E+F+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V +  +L
Sbjct: 696 GHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL 749



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = +3

Query: 258 LMSNDYQGGIFLYVVFAGWAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQ 437
           L++  Y   + L V    +   +V +L++ME LSAFLH LRLHWVEFQ+KFY G+GY F 
Sbjct: 750 LLAWGYNNPLILIVGVLVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFA 809

Query: 438 PFSF 449
           PF+F
Sbjct: 810 PFTF 813


>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 35/54 (64%), Positives = 46/54 (85%)
 Frame = +1

Query: 88  GHHDEEITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
           GH + E +E+F+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V +  +L
Sbjct: 696 GHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL 749



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/59 (50%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
 Frame = +3

Query: 285 IFLYVV-FAGWAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEII 458
           +F+++V    +   +V +L++ME LSAFLH LRLHWVE+Q+KFY G+GY F PF+F ++
Sbjct: 758 VFIWIVGILVFIFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFAPFTFTLV 816


>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 392 DPVQTQRVQEGREPL-HEHEDGDGDGRPAREHHVQE 288
           DP +TQ +   + P  HE EDG+ DG   +E   +E
Sbjct: 89  DPPETQFIPNHQNPNNHEEEDGEEDGDEFKEEDGEE 124


>At5g35320.1 68418.m04186 expressed protein
          Length = 225

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 452 LERERLEEVAFSSVELALELDPVQTQRVQEGREPLHEHEDGDGD 321
           +E E ++     +V   +EL+PV  +R     +PLH H+   G+
Sbjct: 44  MEEEEIDLPMQDTVAEEIELEPVNDERAIVLFKPLHYHQPSSGN 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,677
Number of Sequences: 28952
Number of extensions: 246799
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)